Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09780

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS09775 and RR42_RS09780 are separated by 384 nucleotidesRR42_RS09780 and RR42_RS09785 are separated by 143 nucleotides RR42_RS09775: RR42_RS09775 - heat-shock protein Hsp20, at 2,082,764 to 2,083,186 _RS09775 RR42_RS09780: RR42_RS09780 - hypothetical protein, at 2,083,571 to 2,083,801 _RS09780 RR42_RS09785: RR42_RS09785 - ABC transporter permease, at 2,083,945 to 2,085,081 _RS09785 Position (kb) 2083 2084Strain fitness (log2 ratio) -1 0 1 2at 2082.611 kb on + strandat 2082.611 kb on + strandat 2082.612 kb on - strandat 2082.690 kb on - strandat 2082.851 kb on + strand, within RR42_RS09775at 2082.851 kb on + strand, within RR42_RS09775at 2082.851 kb on + strand, within RR42_RS09775at 2082.851 kb on + strand, within RR42_RS09775at 2082.851 kb on + strand, within RR42_RS09775at 2082.851 kb on + strand, within RR42_RS09775at 2082.851 kb on + strand, within RR42_RS09775at 2082.852 kb on - strand, within RR42_RS09775at 2082.852 kb on - strand, within RR42_RS09775at 2082.852 kb on - strand, within RR42_RS09775at 2082.852 kb on - strand, within RR42_RS09775at 2082.852 kb on - strand, within RR42_RS09775at 2082.852 kb on - strand, within RR42_RS09775at 2082.852 kb on - strand, within RR42_RS09775at 2082.902 kb on + strand, within RR42_RS09775at 2082.903 kb on - strand, within RR42_RS09775at 2082.952 kb on - strand, within RR42_RS09775at 2082.952 kb on - strand, within RR42_RS09775at 2083.137 kb on + strand, within RR42_RS09775at 2083.138 kb on - strand, within RR42_RS09775at 2083.308 kb on - strandat 2083.308 kb on - strandat 2083.308 kb on - strandat 2083.308 kb on - strandat 2083.674 kb on + strand, within RR42_RS09780at 2083.675 kb on - strand, within RR42_RS09780at 2083.675 kb on - strand, within RR42_RS09780at 2083.873 kb on + strandat 2083.874 kb on - strandat 2083.874 kb on - strandat 2083.882 kb on + strandat 2083.969 kb on + strandat 2084.098 kb on + strand, within RR42_RS09785at 2084.098 kb on + strand, within RR42_RS09785at 2084.173 kb on + strand, within RR42_RS09785at 2084.173 kb on + strand, within RR42_RS09785at 2084.174 kb on - strand, within RR42_RS09785at 2084.227 kb on + strand, within RR42_RS09785at 2084.227 kb on + strand, within RR42_RS09785at 2084.266 kb on + strand, within RR42_RS09785at 2084.266 kb on + strand, within RR42_RS09785at 2084.346 kb on + strand, within RR42_RS09785at 2084.347 kb on - strand, within RR42_RS09785at 2084.350 kb on + strand, within RR42_RS09785at 2084.351 kb on - strand, within RR42_RS09785at 2084.351 kb on - strand, within RR42_RS09785at 2084.534 kb on - strand, within RR42_RS09785at 2084.554 kb on - strand, within RR42_RS09785at 2084.554 kb on - strand, within RR42_RS09785at 2084.554 kb on - strand, within RR42_RS09785at 2084.563 kb on + strand, within RR42_RS09785at 2084.564 kb on - strand, within RR42_RS09785at 2084.564 kb on - strand, within RR42_RS09785at 2084.633 kb on - strand, within RR42_RS09785at 2084.681 kb on - strand, within RR42_RS09785at 2084.686 kb on + strand, within RR42_RS09785at 2084.709 kb on + strand, within RR42_RS09785at 2084.709 kb on + strand, within RR42_RS09785at 2084.771 kb on - strand, within RR42_RS09785at 2084.771 kb on - strand, within RR42_RS09785at 2084.779 kb on - strand, within RR42_RS09785

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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2,082,611 + +0.1
2,082,611 + +0.8
2,082,612 - +0.2
2,082,690 - -0.8
2,082,851 + RR42_RS09775 0.21 +0.1
2,082,851 + RR42_RS09775 0.21 -0.7
2,082,851 + RR42_RS09775 0.21 -0.7
2,082,851 + RR42_RS09775 0.21 -0.9
2,082,851 + RR42_RS09775 0.21 +0.2
2,082,851 + RR42_RS09775 0.21 -0.2
2,082,851 + RR42_RS09775 0.21 +0.6
2,082,852 - RR42_RS09775 0.21 -0.1
2,082,852 - RR42_RS09775 0.21 +0.6
2,082,852 - RR42_RS09775 0.21 -0.7
2,082,852 - RR42_RS09775 0.21 -0.8
2,082,852 - RR42_RS09775 0.21 +0.4
2,082,852 - RR42_RS09775 0.21 -1.4
2,082,852 - RR42_RS09775 0.21 -0.2
2,082,902 + RR42_RS09775 0.33 +0.5
2,082,903 - RR42_RS09775 0.33 +0.5
2,082,952 - RR42_RS09775 0.44 +0.7
2,082,952 - RR42_RS09775 0.44 -0.2
2,083,137 + RR42_RS09775 0.88 -0.2
2,083,138 - RR42_RS09775 0.88 +0.1
2,083,308 - -1.4
2,083,308 - +0.1
2,083,308 - -1.1
2,083,308 - -0.8
2,083,674 + RR42_RS09780 0.45 +0.4
2,083,675 - RR42_RS09780 0.45 -1.2
2,083,675 - RR42_RS09780 0.45 +1.0
2,083,873 + -0.1
2,083,874 - +1.0
2,083,874 - +1.8
2,083,882 + -0.9
2,083,969 + -0.8
2,084,098 + RR42_RS09785 0.13 +0.2
2,084,098 + RR42_RS09785 0.13 -0.2
2,084,173 + RR42_RS09785 0.20 +1.0
2,084,173 + RR42_RS09785 0.20 -0.6
2,084,174 - RR42_RS09785 0.20 +0.2
2,084,227 + RR42_RS09785 0.25 +0.1
2,084,227 + RR42_RS09785 0.25 -0.9
2,084,266 + RR42_RS09785 0.28 -0.0
2,084,266 + RR42_RS09785 0.28 -0.2
2,084,346 + RR42_RS09785 0.35 +0.8
2,084,347 - RR42_RS09785 0.35 -0.3
2,084,350 + RR42_RS09785 0.36 -1.5
2,084,351 - RR42_RS09785 0.36 -0.2
2,084,351 - RR42_RS09785 0.36 +0.6
2,084,534 - RR42_RS09785 0.52 -0.8
2,084,554 - RR42_RS09785 0.54 -0.6
2,084,554 - RR42_RS09785 0.54 +0.9
2,084,554 - RR42_RS09785 0.54 +0.3
2,084,563 + RR42_RS09785 0.54 -1.7
2,084,564 - RR42_RS09785 0.54 -0.2
2,084,564 - RR42_RS09785 0.54 +0.3
2,084,633 - RR42_RS09785 0.61 +0.2
2,084,681 - RR42_RS09785 0.65 -1.6
2,084,686 + RR42_RS09785 0.65 +1.0
2,084,709 + RR42_RS09785 0.67 -0.1
2,084,709 + RR42_RS09785 0.67 +0.1
2,084,771 - RR42_RS09785 0.73 -1.4
2,084,771 - RR42_RS09785 0.73 +0.0
2,084,779 - RR42_RS09785 0.73 -0.5

Or see this region's nucleotide sequence