Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS09775 and RR42_RS09780 are separated by 384 nucleotides RR42_RS09780 and RR42_RS09785 are separated by 143 nucleotides
RR42_RS09775: RR42_RS09775 - heat-shock protein Hsp20, at 2,082,764 to 2,083,186
_RS09775
RR42_RS09780: RR42_RS09780 - hypothetical protein, at 2,083,571 to 2,083,801
_RS09780
RR42_RS09785: RR42_RS09785 - ABC transporter permease, at 2,083,945 to 2,085,081
_RS09785
Position (kb)
2083
2084 Strain fitness (log2 ratio)
-1
0
1
2 at 2082.611 kb on + strand at 2082.611 kb on + strand at 2082.612 kb on - strand at 2082.690 kb on - strand at 2082.851 kb on + strand, within RR42_RS09775 at 2082.851 kb on + strand, within RR42_RS09775 at 2082.851 kb on + strand, within RR42_RS09775 at 2082.851 kb on + strand, within RR42_RS09775 at 2082.851 kb on + strand, within RR42_RS09775 at 2082.851 kb on + strand, within RR42_RS09775 at 2082.851 kb on + strand, within RR42_RS09775 at 2082.852 kb on - strand, within RR42_RS09775 at 2082.852 kb on - strand, within RR42_RS09775 at 2082.852 kb on - strand, within RR42_RS09775 at 2082.852 kb on - strand, within RR42_RS09775 at 2082.852 kb on - strand, within RR42_RS09775 at 2082.852 kb on - strand, within RR42_RS09775 at 2082.852 kb on - strand, within RR42_RS09775 at 2082.902 kb on + strand, within RR42_RS09775 at 2082.903 kb on - strand, within RR42_RS09775 at 2082.952 kb on - strand, within RR42_RS09775 at 2082.952 kb on - strand, within RR42_RS09775 at 2083.137 kb on + strand, within RR42_RS09775 at 2083.138 kb on - strand, within RR42_RS09775 at 2083.308 kb on - strand at 2083.308 kb on - strand at 2083.308 kb on - strand at 2083.308 kb on - strand at 2083.674 kb on + strand, within RR42_RS09780 at 2083.675 kb on - strand, within RR42_RS09780 at 2083.675 kb on - strand, within RR42_RS09780 at 2083.873 kb on + strand at 2083.874 kb on - strand at 2083.874 kb on - strand at 2083.882 kb on + strand at 2083.969 kb on + strand at 2084.098 kb on + strand, within RR42_RS09785 at 2084.098 kb on + strand, within RR42_RS09785 at 2084.173 kb on + strand, within RR42_RS09785 at 2084.173 kb on + strand, within RR42_RS09785 at 2084.174 kb on - strand, within RR42_RS09785 at 2084.227 kb on + strand, within RR42_RS09785 at 2084.227 kb on + strand, within RR42_RS09785 at 2084.266 kb on + strand, within RR42_RS09785 at 2084.266 kb on + strand, within RR42_RS09785 at 2084.346 kb on + strand, within RR42_RS09785 at 2084.347 kb on - strand, within RR42_RS09785 at 2084.350 kb on + strand, within RR42_RS09785 at 2084.351 kb on - strand, within RR42_RS09785 at 2084.351 kb on - strand, within RR42_RS09785 at 2084.534 kb on - strand, within RR42_RS09785 at 2084.554 kb on - strand, within RR42_RS09785 at 2084.554 kb on - strand, within RR42_RS09785 at 2084.554 kb on - strand, within RR42_RS09785 at 2084.563 kb on + strand, within RR42_RS09785 at 2084.564 kb on - strand, within RR42_RS09785 at 2084.564 kb on - strand, within RR42_RS09785 at 2084.633 kb on - strand, within RR42_RS09785 at 2084.681 kb on - strand, within RR42_RS09785 at 2084.686 kb on + strand, within RR42_RS09785 at 2084.709 kb on + strand, within RR42_RS09785 at 2084.709 kb on + strand, within RR42_RS09785 at 2084.771 kb on - strand, within RR42_RS09785 at 2084.771 kb on - strand, within RR42_RS09785 at 2084.779 kb on - strand, within RR42_RS09785
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 2,082,611 + +0.1 2,082,611 + +0.8 2,082,612 - +0.2 2,082,690 - -0.8 2,082,851 + RR42_RS09775 0.21 +0.1 2,082,851 + RR42_RS09775 0.21 -0.7 2,082,851 + RR42_RS09775 0.21 -0.7 2,082,851 + RR42_RS09775 0.21 -0.9 2,082,851 + RR42_RS09775 0.21 +0.2 2,082,851 + RR42_RS09775 0.21 -0.2 2,082,851 + RR42_RS09775 0.21 +0.6 2,082,852 - RR42_RS09775 0.21 -0.1 2,082,852 - RR42_RS09775 0.21 +0.6 2,082,852 - RR42_RS09775 0.21 -0.7 2,082,852 - RR42_RS09775 0.21 -0.8 2,082,852 - RR42_RS09775 0.21 +0.4 2,082,852 - RR42_RS09775 0.21 -1.4 2,082,852 - RR42_RS09775 0.21 -0.2 2,082,902 + RR42_RS09775 0.33 +0.5 2,082,903 - RR42_RS09775 0.33 +0.5 2,082,952 - RR42_RS09775 0.44 +0.7 2,082,952 - RR42_RS09775 0.44 -0.2 2,083,137 + RR42_RS09775 0.88 -0.2 2,083,138 - RR42_RS09775 0.88 +0.1 2,083,308 - -1.4 2,083,308 - +0.1 2,083,308 - -1.1 2,083,308 - -0.8 2,083,674 + RR42_RS09780 0.45 +0.4 2,083,675 - RR42_RS09780 0.45 -1.2 2,083,675 - RR42_RS09780 0.45 +1.0 2,083,873 + -0.1 2,083,874 - +1.0 2,083,874 - +1.8 2,083,882 + -0.9 2,083,969 + -0.8 2,084,098 + RR42_RS09785 0.13 +0.2 2,084,098 + RR42_RS09785 0.13 -0.2 2,084,173 + RR42_RS09785 0.20 +1.0 2,084,173 + RR42_RS09785 0.20 -0.6 2,084,174 - RR42_RS09785 0.20 +0.2 2,084,227 + RR42_RS09785 0.25 +0.1 2,084,227 + RR42_RS09785 0.25 -0.9 2,084,266 + RR42_RS09785 0.28 -0.0 2,084,266 + RR42_RS09785 0.28 -0.2 2,084,346 + RR42_RS09785 0.35 +0.8 2,084,347 - RR42_RS09785 0.35 -0.3 2,084,350 + RR42_RS09785 0.36 -1.5 2,084,351 - RR42_RS09785 0.36 -0.2 2,084,351 - RR42_RS09785 0.36 +0.6 2,084,534 - RR42_RS09785 0.52 -0.8 2,084,554 - RR42_RS09785 0.54 -0.6 2,084,554 - RR42_RS09785 0.54 +0.9 2,084,554 - RR42_RS09785 0.54 +0.3 2,084,563 + RR42_RS09785 0.54 -1.7 2,084,564 - RR42_RS09785 0.54 -0.2 2,084,564 - RR42_RS09785 0.54 +0.3 2,084,633 - RR42_RS09785 0.61 +0.2 2,084,681 - RR42_RS09785 0.65 -1.6 2,084,686 + RR42_RS09785 0.65 +1.0 2,084,709 + RR42_RS09785 0.67 -0.1 2,084,709 + RR42_RS09785 0.67 +0.1 2,084,771 - RR42_RS09785 0.73 -1.4 2,084,771 - RR42_RS09785 0.73 +0.0 2,084,779 - RR42_RS09785 0.73 -0.5
Or see this region's nucleotide sequence