Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS07755 and RR42_RS07760 overlap by 20 nucleotides RR42_RS07760 and RR42_RS07765 overlap by 11 nucleotides RR42_RS07765 and RR42_RS07770 are separated by 736 nucleotides
RR42_RS07755: RR42_RS07755 - NADPH flavoprotein, at 1,659,852 to 1,662,059
_RS07755
RR42_RS07760: RR42_RS07760 - thiamine biosynthesis protein ApbE, at 1,662,040 to 1,663,023
_RS07760
RR42_RS07765: RR42_RS07765 - hypothetical protein, at 1,663,013 to 1,663,219
_RS07765
RR42_RS07770: RR42_RS07770 - hypothetical protein, at 1,663,956 to 1,664,780
_RS07770
Position (kb)
1662
1663
1664 Strain fitness (log2 ratio)
-1
0
1 at 1661.139 kb on + strand, within RR42_RS07755 at 1661.286 kb on + strand, within RR42_RS07755 at 1661.340 kb on + strand, within RR42_RS07755 at 1661.340 kb on + strand, within RR42_RS07755 at 1661.340 kb on + strand, within RR42_RS07755 at 1661.494 kb on - strand, within RR42_RS07755 at 1661.496 kb on + strand, within RR42_RS07755 at 1661.865 kb on + strand at 1661.866 kb on - strand at 1661.892 kb on - strand at 1661.987 kb on + strand at 1661.988 kb on - strand at 1661.988 kb on - strand at 1662.054 kb on + strand at 1662.054 kb on + strand at 1662.054 kb on + strand at 1662.055 kb on - strand at 1662.055 kb on - strand at 1662.138 kb on + strand at 1662.139 kb on - strand, within RR42_RS07760 at 1662.538 kb on - strand, within RR42_RS07760 at 1662.735 kb on + strand, within RR42_RS07760 at 1662.929 kb on - strand at 1663.316 kb on + strand at 1663.412 kb on + strand at 1663.412 kb on + strand at 1663.476 kb on - strand at 1663.476 kb on - strand at 1663.606 kb on + strand at 1663.607 kb on - strand at 1663.674 kb on + strand at 1663.675 kb on - strand at 1663.724 kb on + strand at 1663.725 kb on - strand at 1663.914 kb on + strand at 1663.914 kb on + strand at 1663.927 kb on + strand at 1664.011 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 1,661,139 + RR42_RS07755 0.58 +0.5 1,661,286 + RR42_RS07755 0.65 +0.7 1,661,340 + RR42_RS07755 0.67 -1.0 1,661,340 + RR42_RS07755 0.67 -0.1 1,661,340 + RR42_RS07755 0.67 -0.3 1,661,494 - RR42_RS07755 0.74 -1.5 1,661,496 + RR42_RS07755 0.74 -0.1 1,661,865 + -0.4 1,661,866 - +0.2 1,661,892 - +0.5 1,661,987 + -0.3 1,661,988 - +0.6 1,661,988 - +1.0 1,662,054 + +0.0 1,662,054 + +0.1 1,662,054 + +0.3 1,662,055 - +1.3 1,662,055 - +0.6 1,662,138 + -0.2 1,662,139 - RR42_RS07760 0.10 +0.2 1,662,538 - RR42_RS07760 0.51 +0.3 1,662,735 + RR42_RS07760 0.71 +0.7 1,662,929 - +0.1 1,663,316 + -0.3 1,663,412 + +0.1 1,663,412 + +0.6 1,663,476 - -0.5 1,663,476 - -0.6 1,663,606 + -0.5 1,663,607 - +0.4 1,663,674 + -0.1 1,663,675 - +1.3 1,663,724 + -0.2 1,663,725 - +0.7 1,663,914 + -0.2 1,663,914 + +0.0 1,663,927 + -1.7 1,664,011 - +0.0
Or see this region's nucleotide sequence