Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07735

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07730 and RR42_RS07735 are separated by 99 nucleotidesRR42_RS07735 and RR42_RS07740 are separated by 2 nucleotidesRR42_RS07740 and RR42_RS07745 are separated by 143 nucleotides RR42_RS07730: RR42_RS07730 - membrane protein, at 1,655,951 to 1,656,571 _RS07730 RR42_RS07735: RR42_RS07735 - histidine kinase, at 1,656,671 to 1,658,026 _RS07735 RR42_RS07740: RR42_RS07740 - transcriptional regulator, at 1,658,029 to 1,658,688 _RS07740 RR42_RS07745: RR42_RS07745 - hypothetical protein, at 1,658,832 to 1,659,245 _RS07745 Position (kb) 1656 1657 1658 1659Strain fitness (log2 ratio) -2 -1 0 1at 1655.738 kb on - strandat 1655.738 kb on - strandat 1656.051 kb on + strand, within RR42_RS07730at 1656.148 kb on + strand, within RR42_RS07730at 1656.149 kb on - strand, within RR42_RS07730at 1656.201 kb on + strand, within RR42_RS07730at 1656.201 kb on + strand, within RR42_RS07730at 1656.201 kb on + strand, within RR42_RS07730at 1656.284 kb on + strand, within RR42_RS07730at 1656.444 kb on - strand, within RR42_RS07730at 1656.482 kb on + strand, within RR42_RS07730at 1656.555 kb on + strandat 1656.555 kb on + strandat 1656.556 kb on - strandat 1656.556 kb on - strandat 1656.672 kb on + strandat 1656.719 kb on + strandat 1656.719 kb on + strandat 1656.720 kb on - strandat 1656.720 kb on - strandat 1656.759 kb on - strandat 1656.759 kb on - strandat 1656.759 kb on - strandat 1656.803 kb on - strandat 1657.097 kb on + strand, within RR42_RS07735at 1657.098 kb on - strand, within RR42_RS07735at 1657.226 kb on + strand, within RR42_RS07735at 1657.336 kb on + strand, within RR42_RS07735at 1657.337 kb on - strand, within RR42_RS07735at 1657.493 kb on + strand, within RR42_RS07735at 1657.938 kb on + strandat 1658.109 kb on + strand, within RR42_RS07740at 1658.109 kb on + strand, within RR42_RS07740at 1658.109 kb on + strand, within RR42_RS07740at 1658.109 kb on + strand, within RR42_RS07740at 1658.109 kb on + strand, within RR42_RS07740at 1658.109 kb on + strand, within RR42_RS07740at 1658.110 kb on - strand, within RR42_RS07740at 1658.110 kb on - strand, within RR42_RS07740at 1658.110 kb on - strand, within RR42_RS07740at 1658.110 kb on - strand, within RR42_RS07740at 1658.113 kb on + strand, within RR42_RS07740at 1658.182 kb on + strand, within RR42_RS07740at 1658.183 kb on - strand, within RR42_RS07740at 1658.283 kb on + strand, within RR42_RS07740at 1658.396 kb on + strand, within RR42_RS07740at 1658.549 kb on - strand, within RR42_RS07740at 1658.556 kb on - strand, within RR42_RS07740at 1658.556 kb on - strand, within RR42_RS07740at 1658.559 kb on + strand, within RR42_RS07740at 1658.559 kb on + strand, within RR42_RS07740at 1658.703 kb on + strandat 1658.704 kb on - strandat 1658.828 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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1,655,738 - +1.6
1,655,738 - +0.2
1,656,051 + RR42_RS07730 0.16 -0.7
1,656,148 + RR42_RS07730 0.32 -0.3
1,656,149 - RR42_RS07730 0.32 -0.1
1,656,201 + RR42_RS07730 0.40 -0.1
1,656,201 + RR42_RS07730 0.40 -0.5
1,656,201 + RR42_RS07730 0.40 -1.4
1,656,284 + RR42_RS07730 0.54 +0.2
1,656,444 - RR42_RS07730 0.79 -0.1
1,656,482 + RR42_RS07730 0.86 -0.6
1,656,555 + +1.0
1,656,555 + -0.0
1,656,556 - -0.5
1,656,556 - +0.0
1,656,672 + -0.7
1,656,719 + -2.6
1,656,719 + +0.0
1,656,720 - -1.0
1,656,720 - +0.1
1,656,759 - -0.3
1,656,759 - +0.2
1,656,759 - +1.1
1,656,803 - +0.5
1,657,097 + RR42_RS07735 0.31 -0.1
1,657,098 - RR42_RS07735 0.31 -0.9
1,657,226 + RR42_RS07735 0.41 -0.4
1,657,336 + RR42_RS07735 0.49 +1.3
1,657,337 - RR42_RS07735 0.49 +1.0
1,657,493 + RR42_RS07735 0.61 +0.5
1,657,938 + +0.4
1,658,109 + RR42_RS07740 0.12 -0.6
1,658,109 + RR42_RS07740 0.12 +0.2
1,658,109 + RR42_RS07740 0.12 +0.2
1,658,109 + RR42_RS07740 0.12 +0.4
1,658,109 + RR42_RS07740 0.12 +1.0
1,658,109 + RR42_RS07740 0.12 +0.4
1,658,110 - RR42_RS07740 0.12 +0.4
1,658,110 - RR42_RS07740 0.12 -0.6
1,658,110 - RR42_RS07740 0.12 +1.0
1,658,110 - RR42_RS07740 0.12 -1.4
1,658,113 + RR42_RS07740 0.13 -0.4
1,658,182 + RR42_RS07740 0.23 +0.3
1,658,183 - RR42_RS07740 0.23 -0.0
1,658,283 + RR42_RS07740 0.38 +0.5
1,658,396 + RR42_RS07740 0.56 -1.0
1,658,549 - RR42_RS07740 0.79 +0.1
1,658,556 - RR42_RS07740 0.80 -1.5
1,658,556 - RR42_RS07740 0.80 -0.2
1,658,559 + RR42_RS07740 0.80 +1.4
1,658,559 + RR42_RS07740 0.80 -0.3
1,658,703 + -1.5
1,658,704 - +1.1
1,658,828 - -0.5

Or see this region's nucleotide sequence