Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS06760 and RR42_RS06765 are separated by 364 nucleotides RR42_RS06765 and RR42_RS06770 are separated by 179 nucleotides
RR42_RS06760: RR42_RS06760 - hypothetical protein, at 1,466,355 to 1,467,323
_RS06760
RR42_RS06765: RR42_RS06765 - hypothetical protein, at 1,467,688 to 1,468,044
_RS06765
RR42_RS06770: RR42_RS06770 - hypothetical protein, at 1,468,224 to 1,468,445
_RS06770
Position (kb)
1466
1467
1468 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1465.391 kb on + strand at 1465.392 kb on - strand at 1465.392 kb on - strand at 1465.392 kb on - strand at 1465.633 kb on + strand at 1465.633 kb on + strand at 1465.634 kb on - strand at 1465.654 kb on + strand at 1465.716 kb on + strand at 1465.716 kb on + strand at 1465.716 kb on + strand at 1465.720 kb on - strand at 1465.720 kb on - strand at 1465.720 kb on - strand at 1465.720 kb on - strand at 1465.722 kb on + strand at 1465.734 kb on + strand at 1465.755 kb on + strand at 1465.755 kb on + strand at 1465.861 kb on + strand at 1465.993 kb on + strand at 1465.993 kb on + strand at 1465.994 kb on - strand at 1466.299 kb on + strand at 1466.391 kb on - strand at 1466.589 kb on + strand, within RR42_RS06760 at 1466.589 kb on + strand, within RR42_RS06760 at 1466.590 kb on - strand, within RR42_RS06760 at 1466.592 kb on - strand, within RR42_RS06760 at 1466.642 kb on + strand, within RR42_RS06760 at 1466.658 kb on + strand, within RR42_RS06760 at 1466.667 kb on + strand, within RR42_RS06760 at 1466.668 kb on - strand, within RR42_RS06760 at 1466.668 kb on - strand, within RR42_RS06760 at 1466.814 kb on + strand, within RR42_RS06760 at 1466.814 kb on + strand, within RR42_RS06760 at 1466.867 kb on + strand, within RR42_RS06760 at 1467.068 kb on + strand, within RR42_RS06760 at 1467.068 kb on + strand, within RR42_RS06760 at 1467.326 kb on + strand at 1467.326 kb on + strand at 1467.327 kb on - strand at 1467.327 kb on - strand at 1467.442 kb on + strand at 1467.442 kb on + strand at 1467.442 kb on + strand at 1467.443 kb on - strand at 1467.455 kb on - strand at 1467.497 kb on + strand at 1467.498 kb on - strand at 1467.503 kb on + strand at 1467.512 kb on - strand at 1467.649 kb on + strand at 1467.649 kb on + strand at 1467.649 kb on + strand at 1467.649 kb on + strand at 1467.650 kb on - strand at 1467.651 kb on + strand at 1467.651 kb on + strand at 1467.652 kb on - strand at 1467.652 kb on - strand at 1467.698 kb on + strand at 1467.698 kb on + strand at 1467.699 kb on - strand at 1467.853 kb on + strand, within RR42_RS06765 at 1467.854 kb on - strand, within RR42_RS06765 at 1468.148 kb on + strand at 1468.149 kb on - strand at 1468.150 kb on + strand at 1468.152 kb on + strand at 1468.152 kb on + strand at 1468.152 kb on + strand at 1468.153 kb on - strand at 1468.153 kb on - strand at 1468.164 kb on + strand at 1468.246 kb on + strand at 1468.248 kb on + strand, within RR42_RS06770
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 1,465,391 + -0.2 1,465,392 - +0.6 1,465,392 - +0.4 1,465,392 - +0.2 1,465,633 + +3.0 1,465,633 + -0.7 1,465,634 - -1.1 1,465,654 + +1.5 1,465,716 + -0.1 1,465,716 + +0.0 1,465,716 + +0.8 1,465,720 - -0.5 1,465,720 - +0.5 1,465,720 - +0.2 1,465,720 - +0.0 1,465,722 + +2.0 1,465,734 + -0.3 1,465,755 + -1.0 1,465,755 + +0.0 1,465,861 + -0.0 1,465,993 + -0.1 1,465,993 + +0.6 1,465,994 - -0.4 1,466,299 + +0.0 1,466,391 - +0.3 1,466,589 + RR42_RS06760 0.24 -0.1 1,466,589 + RR42_RS06760 0.24 +0.5 1,466,590 - RR42_RS06760 0.24 +1.0 1,466,592 - RR42_RS06760 0.24 -0.7 1,466,642 + RR42_RS06760 0.30 +0.6 1,466,658 + RR42_RS06760 0.31 +0.2 1,466,667 + RR42_RS06760 0.32 +0.9 1,466,668 - RR42_RS06760 0.32 +0.5 1,466,668 - RR42_RS06760 0.32 +0.0 1,466,814 + RR42_RS06760 0.47 +0.4 1,466,814 + RR42_RS06760 0.47 +0.2 1,466,867 + RR42_RS06760 0.53 +0.8 1,467,068 + RR42_RS06760 0.74 +1.3 1,467,068 + RR42_RS06760 0.74 +1.0 1,467,326 + -1.4 1,467,326 + -1.8 1,467,327 - +0.0 1,467,327 - +1.5 1,467,442 + +0.7 1,467,442 + +0.9 1,467,442 + +0.8 1,467,443 - -0.3 1,467,455 - -0.1 1,467,497 + +0.8 1,467,498 - -0.3 1,467,503 + -0.2 1,467,512 - -0.1 1,467,649 + +0.5 1,467,649 + -0.8 1,467,649 + +0.0 1,467,649 + +1.6 1,467,650 - -0.5 1,467,651 + +1.2 1,467,651 + +0.0 1,467,652 - +0.0 1,467,652 - +0.0 1,467,698 + +0.9 1,467,698 + +0.8 1,467,699 - -0.1 1,467,853 + RR42_RS06765 0.46 +2.6 1,467,854 - RR42_RS06765 0.46 -0.1 1,468,148 + +0.0 1,468,149 - +1.2 1,468,150 + +0.7 1,468,152 + +0.8 1,468,152 + +0.1 1,468,152 + -0.8 1,468,153 - -0.7 1,468,153 - -0.2 1,468,164 + +0.2 1,468,246 + +0.0 1,468,248 + RR42_RS06770 0.11 -1.2
Or see this region's nucleotide sequence