Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06760

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06760 and RR42_RS06765 are separated by 364 nucleotidesRR42_RS06765 and RR42_RS06770 are separated by 179 nucleotides RR42_RS06760: RR42_RS06760 - hypothetical protein, at 1,466,355 to 1,467,323 _RS06760 RR42_RS06765: RR42_RS06765 - hypothetical protein, at 1,467,688 to 1,468,044 _RS06765 RR42_RS06770: RR42_RS06770 - hypothetical protein, at 1,468,224 to 1,468,445 _RS06770 Position (kb) 1466 1467 1468Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1465.391 kb on + strandat 1465.392 kb on - strandat 1465.392 kb on - strandat 1465.392 kb on - strandat 1465.633 kb on + strandat 1465.633 kb on + strandat 1465.634 kb on - strandat 1465.654 kb on + strandat 1465.716 kb on + strandat 1465.716 kb on + strandat 1465.716 kb on + strandat 1465.720 kb on - strandat 1465.720 kb on - strandat 1465.720 kb on - strandat 1465.720 kb on - strandat 1465.722 kb on + strandat 1465.734 kb on + strandat 1465.755 kb on + strandat 1465.755 kb on + strandat 1465.861 kb on + strandat 1465.993 kb on + strandat 1465.993 kb on + strandat 1465.994 kb on - strandat 1466.299 kb on + strandat 1466.391 kb on - strandat 1466.589 kb on + strand, within RR42_RS06760at 1466.589 kb on + strand, within RR42_RS06760at 1466.590 kb on - strand, within RR42_RS06760at 1466.592 kb on - strand, within RR42_RS06760at 1466.642 kb on + strand, within RR42_RS06760at 1466.658 kb on + strand, within RR42_RS06760at 1466.667 kb on + strand, within RR42_RS06760at 1466.668 kb on - strand, within RR42_RS06760at 1466.668 kb on - strand, within RR42_RS06760at 1466.814 kb on + strand, within RR42_RS06760at 1466.814 kb on + strand, within RR42_RS06760at 1466.867 kb on + strand, within RR42_RS06760at 1467.068 kb on + strand, within RR42_RS06760at 1467.068 kb on + strand, within RR42_RS06760at 1467.326 kb on + strandat 1467.326 kb on + strandat 1467.327 kb on - strandat 1467.327 kb on - strandat 1467.442 kb on + strandat 1467.442 kb on + strandat 1467.442 kb on + strandat 1467.443 kb on - strandat 1467.455 kb on - strandat 1467.497 kb on + strandat 1467.498 kb on - strandat 1467.503 kb on + strandat 1467.512 kb on - strandat 1467.649 kb on + strandat 1467.649 kb on + strandat 1467.649 kb on + strandat 1467.649 kb on + strandat 1467.650 kb on - strandat 1467.651 kb on + strandat 1467.651 kb on + strandat 1467.652 kb on - strandat 1467.652 kb on - strandat 1467.698 kb on + strandat 1467.698 kb on + strandat 1467.699 kb on - strandat 1467.853 kb on + strand, within RR42_RS06765at 1467.854 kb on - strand, within RR42_RS06765at 1468.148 kb on + strandat 1468.149 kb on - strandat 1468.150 kb on + strandat 1468.152 kb on + strandat 1468.152 kb on + strandat 1468.152 kb on + strandat 1468.153 kb on - strandat 1468.153 kb on - strandat 1468.164 kb on + strandat 1468.246 kb on + strandat 1468.248 kb on + strand, within RR42_RS06770

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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1,465,391 + -0.2
1,465,392 - +0.6
1,465,392 - +0.4
1,465,392 - +0.2
1,465,633 + +3.0
1,465,633 + -0.7
1,465,634 - -1.1
1,465,654 + +1.5
1,465,716 + -0.1
1,465,716 + +0.0
1,465,716 + +0.8
1,465,720 - -0.5
1,465,720 - +0.5
1,465,720 - +0.2
1,465,720 - +0.0
1,465,722 + +2.0
1,465,734 + -0.3
1,465,755 + -1.0
1,465,755 + +0.0
1,465,861 + -0.0
1,465,993 + -0.1
1,465,993 + +0.6
1,465,994 - -0.4
1,466,299 + +0.0
1,466,391 - +0.3
1,466,589 + RR42_RS06760 0.24 -0.1
1,466,589 + RR42_RS06760 0.24 +0.5
1,466,590 - RR42_RS06760 0.24 +1.0
1,466,592 - RR42_RS06760 0.24 -0.7
1,466,642 + RR42_RS06760 0.30 +0.6
1,466,658 + RR42_RS06760 0.31 +0.2
1,466,667 + RR42_RS06760 0.32 +0.9
1,466,668 - RR42_RS06760 0.32 +0.5
1,466,668 - RR42_RS06760 0.32 +0.0
1,466,814 + RR42_RS06760 0.47 +0.4
1,466,814 + RR42_RS06760 0.47 +0.2
1,466,867 + RR42_RS06760 0.53 +0.8
1,467,068 + RR42_RS06760 0.74 +1.3
1,467,068 + RR42_RS06760 0.74 +1.0
1,467,326 + -1.4
1,467,326 + -1.8
1,467,327 - +0.0
1,467,327 - +1.5
1,467,442 + +0.7
1,467,442 + +0.9
1,467,442 + +0.8
1,467,443 - -0.3
1,467,455 - -0.1
1,467,497 + +0.8
1,467,498 - -0.3
1,467,503 + -0.2
1,467,512 - -0.1
1,467,649 + +0.5
1,467,649 + -0.8
1,467,649 + +0.0
1,467,649 + +1.6
1,467,650 - -0.5
1,467,651 + +1.2
1,467,651 + +0.0
1,467,652 - +0.0
1,467,652 - +0.0
1,467,698 + +0.9
1,467,698 + +0.8
1,467,699 - -0.1
1,467,853 + RR42_RS06765 0.46 +2.6
1,467,854 - RR42_RS06765 0.46 -0.1
1,468,148 + +0.0
1,468,149 - +1.2
1,468,150 + +0.7
1,468,152 + +0.8
1,468,152 + +0.1
1,468,152 + -0.8
1,468,153 - -0.7
1,468,153 - -0.2
1,468,164 + +0.2
1,468,246 + +0.0
1,468,248 + RR42_RS06770 0.11 -1.2

Or see this region's nucleotide sequence