Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03675 and RR42_RS03680 are separated by 27 nucleotides RR42_RS03680 and RR42_RS03685 are separated by 110 nucleotides RR42_RS03685 and RR42_RS03690 are separated by 579 nucleotides RR42_RS03690 and RR42_RS03695 are separated by 111 nucleotides
RR42_RS03675: RR42_RS03675 - hypothetical protein, at 813,408 to 813,608
_RS03675
RR42_RS03680: RR42_RS03680 - hypothetical protein, at 813,636 to 813,878
_RS03680
RR42_RS03685: RR42_RS03685 - GTP cyclohydrolase, at 813,989 to 814,258
_RS03685
RR42_RS03690: RR42_RS03690 - hypothetical protein, at 814,838 to 815,059
_RS03690
RR42_RS03695: RR42_RS03695 - hypothetical protein, at 815,171 to 816,673
_RS03695
Position (kb) 813
814
815 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 813.017 kb on + strand at 813.017 kb on + strand at 813.063 kb on + strand at 813.064 kb on - strand at 813.167 kb on + strand at 813.168 kb on - strand at 813.244 kb on + strand at 813.244 kb on + strand at 813.286 kb on + strand at 813.286 kb on + strand at 813.287 kb on - strand at 813.295 kb on + strand at 813.295 kb on + strand at 813.296 kb on - strand at 813.296 kb on - strand at 813.296 kb on - strand at 813.438 kb on + strand, within RR42_RS03675 at 813.439 kb on - strand, within RR42_RS03675 at 813.439 kb on - strand, within RR42_RS03675 at 813.490 kb on - strand, within RR42_RS03675 at 813.490 kb on - strand, within RR42_RS03675 at 813.490 kb on - strand, within RR42_RS03675 at 813.492 kb on - strand, within RR42_RS03675 at 813.492 kb on - strand, within RR42_RS03675 at 813.500 kb on + strand, within RR42_RS03675 at 813.638 kb on - strand at 813.661 kb on + strand, within RR42_RS03680 at 813.661 kb on + strand, within RR42_RS03680 at 813.662 kb on - strand, within RR42_RS03680 at 813.662 kb on - strand, within RR42_RS03680 at 813.990 kb on + strand at 813.990 kb on + strand at 814.039 kb on - strand, within RR42_RS03685 at 814.208 kb on + strand, within RR42_RS03685 at 814.284 kb on + strand at 814.284 kb on + strand at 814.285 kb on - strand at 814.398 kb on + strand at 814.427 kb on - strand at 814.499 kb on - strand at 814.617 kb on + strand at 814.618 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 813,017 + +3.8 813,017 + -1.7 813,063 + -2.3 813,064 - -0.2 813,167 + -0.4 813,168 - +0.6 813,244 + +0.6 813,244 + -0.4 813,286 + -0.0 813,286 + -0.1 813,287 - -0.4 813,295 + -0.2 813,295 + -0.9 813,296 - -0.5 813,296 - +0.4 813,296 - -1.7 813,438 + RR42_RS03675 0.15 -0.8 813,439 - RR42_RS03675 0.15 -1.5 813,439 - RR42_RS03675 0.15 +0.5 813,490 - RR42_RS03675 0.41 +0.5 813,490 - RR42_RS03675 0.41 -0.1 813,490 - RR42_RS03675 0.41 +0.1 813,492 - RR42_RS03675 0.42 -0.3 813,492 - RR42_RS03675 0.42 +0.4 813,500 + RR42_RS03675 0.46 +0.7 813,638 - +1.1 813,661 + RR42_RS03680 0.10 -0.4 813,661 + RR42_RS03680 0.10 -0.7 813,662 - RR42_RS03680 0.11 -1.0 813,662 - RR42_RS03680 0.11 +0.3 813,990 + +0.4 813,990 + +0.3 814,039 - RR42_RS03685 0.19 -0.0 814,208 + RR42_RS03685 0.81 +0.8 814,284 + -1.7 814,284 + -0.3 814,285 - +0.4 814,398 + -0.6 814,427 - -0.5 814,499 - -0.1 814,617 + -0.3 814,618 - +0.1
Or see this region's nucleotide sequence