Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02915 and RR42_RS02920 are separated by 51 nucleotides RR42_RS02920 and RR42_RS02925 are separated by 141 nucleotides RR42_RS02925 and RR42_RS02930 are separated by 163 nucleotides RR42_RS02930 and RR42_RS02935 are separated by 9 nucleotides
RR42_RS02915: RR42_RS02915 - hypothetical protein, at 650,435 to 651,466
_RS02915
RR42_RS02920: RR42_RS02920 - hypothetical protein, at 651,518 to 651,892
_RS02920
RR42_RS02925: RR42_RS02925 - membrane protein, at 652,034 to 652,945
_RS02925
RR42_RS02930: RR42_RS02930 - AsnC family transcriptional regulator, at 653,109 to 653,579
_RS02930
RR42_RS02935: RR42_RS02935 - malonate decarboxylase subunit epsilon, at 653,589 to 654,527
_RS02935
Position (kb) 652
653 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 651.056 kb on + strand, within RR42_RS02915 at 651.223 kb on + strand, within RR42_RS02915 at 651.266 kb on + strand, within RR42_RS02915 at 651.377 kb on + strand at 651.378 kb on - strand at 651.465 kb on - strand at 651.649 kb on - strand, within RR42_RS02920 at 651.649 kb on - strand, within RR42_RS02920 at 651.652 kb on - strand, within RR42_RS02920 at 651.663 kb on + strand, within RR42_RS02920 at 651.663 kb on + strand, within RR42_RS02920 at 651.684 kb on - strand, within RR42_RS02920 at 651.705 kb on + strand, within RR42_RS02920 at 651.705 kb on + strand, within RR42_RS02920 at 651.706 kb on - strand, within RR42_RS02920 at 651.706 kb on - strand, within RR42_RS02920 at 651.706 kb on - strand, within RR42_RS02920 at 651.723 kb on + strand, within RR42_RS02920 at 651.723 kb on + strand, within RR42_RS02920 at 651.741 kb on + strand, within RR42_RS02920 at 651.925 kb on - strand at 651.925 kb on - strand at 651.947 kb on + strand at 651.947 kb on + strand at 651.947 kb on + strand at 651.948 kb on - strand at 651.961 kb on + strand at 651.961 kb on + strand at 651.961 kb on + strand at 651.962 kb on - strand at 651.962 kb on - strand at 651.962 kb on - strand at 651.980 kb on - strand at 652.249 kb on + strand, within RR42_RS02925 at 652.249 kb on + strand, within RR42_RS02925 at 652.250 kb on - strand, within RR42_RS02925 at 652.493 kb on - strand, within RR42_RS02925 at 652.545 kb on + strand, within RR42_RS02925 at 652.545 kb on + strand, within RR42_RS02925 at 652.545 kb on + strand, within RR42_RS02925 at 652.546 kb on - strand, within RR42_RS02925 at 652.668 kb on + strand, within RR42_RS02925 at 652.668 kb on + strand, within RR42_RS02925 at 652.669 kb on - strand, within RR42_RS02925 at 652.669 kb on - strand, within RR42_RS02925 at 653.022 kb on - strand at 653.410 kb on - strand, within RR42_RS02930 at 653.553 kb on + strand at 653.853 kb on - strand, within RR42_RS02935 at 653.863 kb on + strand, within RR42_RS02935 at 653.864 kb on - strand, within RR42_RS02935
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 651,056 + RR42_RS02915 0.60 +1.1 651,223 + RR42_RS02915 0.76 -0.6 651,266 + RR42_RS02915 0.81 +1.1 651,377 + +0.6 651,378 - +0.0 651,465 - +1.9 651,649 - RR42_RS02920 0.35 -1.1 651,649 - RR42_RS02920 0.35 -0.2 651,652 - RR42_RS02920 0.36 -0.3 651,663 + RR42_RS02920 0.39 -0.3 651,663 + RR42_RS02920 0.39 +0.5 651,684 - RR42_RS02920 0.44 -0.2 651,705 + RR42_RS02920 0.50 -0.6 651,705 + RR42_RS02920 0.50 -0.3 651,706 - RR42_RS02920 0.50 -0.2 651,706 - RR42_RS02920 0.50 -0.5 651,706 - RR42_RS02920 0.50 +0.9 651,723 + RR42_RS02920 0.55 +0.6 651,723 + RR42_RS02920 0.55 -1.1 651,741 + RR42_RS02920 0.59 +1.4 651,925 - -3.0 651,925 - +1.3 651,947 + +0.4 651,947 + -1.0 651,947 + +2.2 651,948 - -0.4 651,961 + +0.1 651,961 + +0.7 651,961 + +0.2 651,962 - -0.2 651,962 - +1.2 651,962 - -0.0 651,980 - -0.2 652,249 + RR42_RS02925 0.24 -0.1 652,249 + RR42_RS02925 0.24 +1.4 652,250 - RR42_RS02925 0.24 -1.0 652,493 - RR42_RS02925 0.50 +0.7 652,545 + RR42_RS02925 0.56 -0.1 652,545 + RR42_RS02925 0.56 +0.2 652,545 + RR42_RS02925 0.56 -0.2 652,546 - RR42_RS02925 0.56 -0.8 652,668 + RR42_RS02925 0.70 -2.6 652,668 + RR42_RS02925 0.70 +1.2 652,669 - RR42_RS02925 0.70 +0.6 652,669 - RR42_RS02925 0.70 -0.0 653,022 - +0.1 653,410 - RR42_RS02930 0.64 -0.0 653,553 + -1.0 653,853 - RR42_RS02935 0.28 +0.2 653,863 + RR42_RS02935 0.29 +0.9 653,864 - RR42_RS02935 0.29 +0.4
Or see this region's nucleotide sequence