Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01560 and RR42_RS01565 are separated by 362 nucleotides RR42_RS01565 and RR42_RS01570 are separated by 39 nucleotides RR42_RS01570 and RR42_RS01575 are separated by 355 nucleotides
RR42_RS01560: RR42_RS01560 - diguanylate cyclase, at 350,847 to 352,628
_RS01560
RR42_RS01565: RR42_RS01565 - hypothetical protein, at 352,991 to 353,563
_RS01565
RR42_RS01570: RR42_RS01570 - GntR family transcriptional regulator, at 353,603 to 355,120
_RS01570
RR42_RS01575: RR42_RS01575 - omega amino acid--pyruvate aminotransferase, at 355,476 to 356,807
_RS01575
Position (kb) 353
354
355
356 Strain fitness (log2 ratio) -2
-1
0
1
2 at 352.685 kb on + strand at 352.685 kb on + strand at 352.686 kb on - strand at 352.736 kb on + strand at 352.737 kb on - strand at 352.754 kb on + strand at 352.765 kb on - strand at 352.769 kb on - strand at 352.821 kb on + strand at 352.821 kb on + strand at 352.822 kb on - strand at 352.901 kb on - strand at 352.968 kb on + strand at 352.968 kb on + strand at 352.969 kb on - strand at 352.969 kb on - strand at 352.969 kb on - strand at 352.969 kb on - strand at 352.996 kb on + strand at 352.997 kb on - strand at 353.034 kb on + strand at 353.035 kb on + strand at 353.035 kb on + strand at 353.035 kb on + strand at 353.035 kb on + strand at 353.035 kb on + strand at 353.035 kb on + strand at 353.035 kb on + strand at 353.035 kb on + strand at 353.035 kb on + strand at 353.036 kb on - strand at 353.036 kb on - strand at 353.036 kb on - strand at 353.036 kb on - strand at 353.036 kb on - strand at 353.036 kb on - strand at 353.036 kb on - strand at 353.036 kb on - strand at 353.144 kb on + strand, within RR42_RS01565 at 353.144 kb on + strand, within RR42_RS01565 at 353.144 kb on + strand, within RR42_RS01565 at 353.145 kb on - strand, within RR42_RS01565 at 353.145 kb on - strand, within RR42_RS01565 at 353.255 kb on - strand, within RR42_RS01565 at 353.371 kb on + strand, within RR42_RS01565 at 353.372 kb on - strand, within RR42_RS01565 at 353.372 kb on - strand, within RR42_RS01565 at 353.480 kb on + strand, within RR42_RS01565 at 353.543 kb on + strand at 353.544 kb on - strand at 353.544 kb on - strand at 353.544 kb on - strand at 353.759 kb on + strand, within RR42_RS01570 at 353.793 kb on + strand, within RR42_RS01570 at 353.794 kb on - strand, within RR42_RS01570 at 354.018 kb on + strand, within RR42_RS01570 at 354.018 kb on + strand, within RR42_RS01570 at 354.019 kb on - strand, within RR42_RS01570 at 354.042 kb on + strand, within RR42_RS01570 at 354.183 kb on + strand, within RR42_RS01570 at 354.184 kb on - strand, within RR42_RS01570 at 354.184 kb on - strand, within RR42_RS01570 at 354.249 kb on + strand, within RR42_RS01570 at 354.250 kb on - strand, within RR42_RS01570 at 354.250 kb on - strand, within RR42_RS01570 at 354.250 kb on - strand, within RR42_RS01570 at 354.253 kb on + strand, within RR42_RS01570 at 354.253 kb on + strand, within RR42_RS01570 at 354.253 kb on + strand, within RR42_RS01570 at 354.254 kb on - strand, within RR42_RS01570 at 354.254 kb on - strand, within RR42_RS01570 at 354.254 kb on - strand, within RR42_RS01570 at 354.631 kb on + strand, within RR42_RS01570 at 354.942 kb on + strand, within RR42_RS01570 at 355.132 kb on - strand at 355.132 kb on - strand at 355.309 kb on + strand at 355.310 kb on - strand at 355.333 kb on - strand at 355.359 kb on + strand at 355.359 kb on + strand at 355.360 kb on - strand at 355.361 kb on + strand at 355.361 kb on + strand at 355.362 kb on - strand at 355.369 kb on - strand at 355.387 kb on - strand at 355.475 kb on + strand at 355.475 kb on + strand at 355.475 kb on + strand at 355.475 kb on + strand at 355.475 kb on + strand at 355.475 kb on + strand at 355.475 kb on + strand at 355.475 kb on + strand at 355.475 kb on + strand at 355.476 kb on - strand at 355.476 kb on - strand at 355.476 kb on - strand at 355.476 kb on - strand at 355.476 kb on - strand at 355.546 kb on - strand at 355.587 kb on + strand at 355.587 kb on + strand at 355.587 kb on + strand at 355.588 kb on - strand at 355.588 kb on - strand at 355.590 kb on + strand at 355.590 kb on + strand at 355.591 kb on - strand at 355.857 kb on + strand, within RR42_RS01575 at 355.857 kb on + strand, within RR42_RS01575 at 355.857 kb on + strand, within RR42_RS01575 at 355.858 kb on - strand, within RR42_RS01575 at 356.024 kb on + strand, within RR42_RS01575 at 356.024 kb on + strand, within RR42_RS01575 at 356.025 kb on - strand, within RR42_RS01575 at 356.040 kb on + strand, within RR42_RS01575
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 352,685 + +1.4 352,685 + -1.0 352,686 - -0.7 352,736 + -1.1 352,737 - +0.6 352,754 + -0.8 352,765 - +0.7 352,769 - -0.6 352,821 + +0.4 352,821 + +0.3 352,822 - +0.6 352,901 - -0.0 352,968 + -1.6 352,968 + -1.6 352,969 - -0.0 352,969 - +1.1 352,969 - +0.4 352,969 - +0.6 352,996 + -0.3 352,997 - +0.1 353,034 + +0.6 353,035 + +0.4 353,035 + -0.4 353,035 + -0.0 353,035 + +0.0 353,035 + +1.3 353,035 + -0.2 353,035 + +0.4 353,035 + +1.4 353,035 + +0.2 353,036 - -0.1 353,036 - +2.2 353,036 - +0.1 353,036 - -0.1 353,036 - +0.7 353,036 - +2.0 353,036 - +1.9 353,036 - +0.8 353,144 + RR42_RS01565 0.27 -0.8 353,144 + RR42_RS01565 0.27 +0.7 353,144 + RR42_RS01565 0.27 +0.5 353,145 - RR42_RS01565 0.27 -0.5 353,145 - RR42_RS01565 0.27 -0.6 353,255 - RR42_RS01565 0.46 +2.1 353,371 + RR42_RS01565 0.66 -1.6 353,372 - RR42_RS01565 0.66 +0.4 353,372 - RR42_RS01565 0.66 -0.5 353,480 + RR42_RS01565 0.85 +0.6 353,543 + -0.1 353,544 - +0.2 353,544 - +0.1 353,544 - +0.3 353,759 + RR42_RS01570 0.10 +0.8 353,793 + RR42_RS01570 0.13 -1.0 353,794 - RR42_RS01570 0.13 +0.2 354,018 + RR42_RS01570 0.27 -0.5 354,018 + RR42_RS01570 0.27 -0.3 354,019 - RR42_RS01570 0.27 -0.1 354,042 + RR42_RS01570 0.29 +0.1 354,183 + RR42_RS01570 0.38 +0.2 354,184 - RR42_RS01570 0.38 -1.4 354,184 - RR42_RS01570 0.38 -0.7 354,249 + RR42_RS01570 0.43 +0.4 354,250 - RR42_RS01570 0.43 +0.2 354,250 - RR42_RS01570 0.43 -0.2 354,250 - RR42_RS01570 0.43 -0.3 354,253 + RR42_RS01570 0.43 -0.5 354,253 + RR42_RS01570 0.43 +0.2 354,253 + RR42_RS01570 0.43 +2.2 354,254 - RR42_RS01570 0.43 -1.1 354,254 - RR42_RS01570 0.43 -0.4 354,254 - RR42_RS01570 0.43 +0.7 354,631 + RR42_RS01570 0.68 -0.1 354,942 + RR42_RS01570 0.88 +1.4 355,132 - -0.4 355,132 - -0.4 355,309 + +0.7 355,310 - +0.2 355,333 - +0.9 355,359 + -0.4 355,359 + -0.1 355,360 - +0.6 355,361 + -0.4 355,361 + -0.6 355,362 - +1.4 355,369 - +0.2 355,387 - +0.9 355,475 + +0.6 355,475 + -0.1 355,475 + -1.1 355,475 + -0.9 355,475 + +0.1 355,475 + +0.3 355,475 + +0.8 355,475 + -2.1 355,475 + +0.9 355,476 - -0.9 355,476 - +0.0 355,476 - -1.1 355,476 - +0.3 355,476 - +0.3 355,546 - -1.6 355,587 + -0.3 355,587 + +0.4 355,587 + -0.9 355,588 - +0.1 355,588 - +0.2 355,590 + -0.0 355,590 + -0.8 355,591 - -0.3 355,857 + RR42_RS01575 0.29 -0.1 355,857 + RR42_RS01575 0.29 -0.6 355,857 + RR42_RS01575 0.29 -0.6 355,858 - RR42_RS01575 0.29 +1.1 356,024 + RR42_RS01575 0.41 -0.4 356,024 + RR42_RS01575 0.41 +0.1 356,025 - RR42_RS01575 0.41 -0.9 356,040 + RR42_RS01575 0.42 -0.4
Or see this region's nucleotide sequence