Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00295 and RR42_RS00300 are separated by 64 nucleotides RR42_RS00300 and RR42_RS00305 are separated by 87 nucleotides
RR42_RS00295: RR42_RS00295 - DEAD/DEAH box helicase, at 84,587 to 86,008
_RS00295
RR42_RS00300: RR42_RS00300 - kinase, at 86,073 to 86,921
_RS00300
RR42_RS00305: RR42_RS00305 - hypothetical protein, at 87,009 to 88,082
_RS00305
Position (kb) 86
87 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 85.130 kb on + strand, within RR42_RS00295 at 85.130 kb on + strand, within RR42_RS00295 at 85.131 kb on - strand, within RR42_RS00295 at 85.131 kb on - strand, within RR42_RS00295 at 85.131 kb on - strand, within RR42_RS00295 at 85.598 kb on + strand, within RR42_RS00295 at 85.598 kb on + strand, within RR42_RS00295 at 85.598 kb on + strand, within RR42_RS00295 at 85.651 kb on + strand, within RR42_RS00295 at 85.691 kb on - strand, within RR42_RS00295 at 85.859 kb on + strand, within RR42_RS00295 at 85.907 kb on + strand at 85.907 kb on + strand at 85.907 kb on + strand at 85.908 kb on - strand at 86.166 kb on + strand, within RR42_RS00300 at 86.166 kb on + strand, within RR42_RS00300 at 86.167 kb on - strand, within RR42_RS00300 at 86.167 kb on - strand, within RR42_RS00300 at 86.167 kb on - strand, within RR42_RS00300 at 86.746 kb on - strand, within RR42_RS00300 at 86.769 kb on + strand, within RR42_RS00300 at 86.769 kb on + strand, within RR42_RS00300 at 87.022 kb on + strand at 87.023 kb on - strand at 87.023 kb on - strand at 87.023 kb on - strand at 87.023 kb on - strand at 87.143 kb on + strand, within RR42_RS00305 at 87.144 kb on - strand, within RR42_RS00305 at 87.232 kb on + strand, within RR42_RS00305 at 87.232 kb on + strand, within RR42_RS00305 at 87.310 kb on + strand, within RR42_RS00305 at 87.311 kb on - strand, within RR42_RS00305 at 87.379 kb on + strand, within RR42_RS00305 at 87.379 kb on + strand, within RR42_RS00305 at 87.380 kb on - strand, within RR42_RS00305 at 87.380 kb on - strand, within RR42_RS00305 at 87.380 kb on - strand, within RR42_RS00305 at 87.380 kb on - strand, within RR42_RS00305 at 87.380 kb on - strand, within RR42_RS00305 at 87.422 kb on - strand, within RR42_RS00305 at 87.440 kb on - strand, within RR42_RS00305 at 87.482 kb on + strand, within RR42_RS00305 at 87.482 kb on + strand, within RR42_RS00305 at 87.483 kb on - strand, within RR42_RS00305 at 87.644 kb on - strand, within RR42_RS00305 at 87.703 kb on + strand, within RR42_RS00305 at 87.703 kb on + strand, within RR42_RS00305 at 87.703 kb on + strand, within RR42_RS00305 at 87.704 kb on - strand, within RR42_RS00305 at 87.712 kb on + strand, within RR42_RS00305 at 87.751 kb on + strand, within RR42_RS00305 at 87.752 kb on - strand, within RR42_RS00305 at 87.752 kb on - strand, within RR42_RS00305 at 87.752 kb on - strand, within RR42_RS00305 at 87.791 kb on + strand, within RR42_RS00305 at 87.792 kb on - strand, within RR42_RS00305 at 87.811 kb on + strand, within RR42_RS00305 at 87.818 kb on - strand, within RR42_RS00305 at 87.818 kb on - strand, within RR42_RS00305 at 87.888 kb on - strand, within RR42_RS00305
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 85,130 + RR42_RS00295 0.38 -0.5 85,130 + RR42_RS00295 0.38 +0.5 85,131 - RR42_RS00295 0.38 +0.4 85,131 - RR42_RS00295 0.38 -0.5 85,131 - RR42_RS00295 0.38 +1.1 85,598 + RR42_RS00295 0.71 +0.5 85,598 + RR42_RS00295 0.71 +0.9 85,598 + RR42_RS00295 0.71 +0.0 85,651 + RR42_RS00295 0.75 +2.7 85,691 - RR42_RS00295 0.78 -3.2 85,859 + RR42_RS00295 0.89 -0.5 85,907 + +0.8 85,907 + -1.2 85,907 + +0.4 85,908 - -0.5 86,166 + RR42_RS00300 0.11 +0.5 86,166 + RR42_RS00300 0.11 +0.2 86,167 - RR42_RS00300 0.11 +0.5 86,167 - RR42_RS00300 0.11 +0.5 86,167 - RR42_RS00300 0.11 +1.5 86,746 - RR42_RS00300 0.79 -1.0 86,769 + RR42_RS00300 0.82 +0.9 86,769 + RR42_RS00300 0.82 +1.4 87,022 + -0.2 87,023 - -1.5 87,023 - -0.1 87,023 - -1.2 87,023 - -0.1 87,143 + RR42_RS00305 0.12 +1.9 87,144 - RR42_RS00305 0.13 +0.7 87,232 + RR42_RS00305 0.21 -0.2 87,232 + RR42_RS00305 0.21 +1.0 87,310 + RR42_RS00305 0.28 +2.2 87,311 - RR42_RS00305 0.28 -1.4 87,379 + RR42_RS00305 0.34 +0.1 87,379 + RR42_RS00305 0.34 -0.5 87,380 - RR42_RS00305 0.35 +0.8 87,380 - RR42_RS00305 0.35 +0.1 87,380 - RR42_RS00305 0.35 +0.5 87,380 - RR42_RS00305 0.35 -0.5 87,380 - RR42_RS00305 0.35 +0.5 87,422 - RR42_RS00305 0.38 +1.5 87,440 - RR42_RS00305 0.40 -0.9 87,482 + RR42_RS00305 0.44 +1.4 87,482 + RR42_RS00305 0.44 +0.0 87,483 - RR42_RS00305 0.44 -1.1 87,644 - RR42_RS00305 0.59 -0.6 87,703 + RR42_RS00305 0.65 -0.0 87,703 + RR42_RS00305 0.65 -0.2 87,703 + RR42_RS00305 0.65 -0.3 87,704 - RR42_RS00305 0.65 -1.3 87,712 + RR42_RS00305 0.65 +0.4 87,751 + RR42_RS00305 0.69 +0.3 87,752 - RR42_RS00305 0.69 -0.8 87,752 - RR42_RS00305 0.69 +0.2 87,752 - RR42_RS00305 0.69 -0.8 87,791 + RR42_RS00305 0.73 -0.2 87,792 - RR42_RS00305 0.73 +0.3 87,811 + RR42_RS00305 0.75 -0.2 87,818 - RR42_RS00305 0.75 +1.1 87,818 - RR42_RS00305 0.75 -0.2 87,888 - RR42_RS00305 0.82 -0.1
Or see this region's nucleotide sequence