Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_833

Experiment: Rifampicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_831 and Pf1N1B4_832 are separated by 254 nucleotidesPf1N1B4_832 and Pf1N1B4_833 are separated by 2 nucleotidesPf1N1B4_833 and Pf1N1B4_834 are separated by 62 nucleotides Pf1N1B4_831 - hypothetical protein, at 952,481 to 952,804 _831 Pf1N1B4_832 - hypothetical protein, at 953,059 to 953,349 _832 Pf1N1B4_833 - PTS system, glucose-specific IIA component / Phosphotransferase system, phosphocarrier protein HPr / Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9), at 953,352 to 955,886 _833 Pf1N1B4_834 - Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein), at 955,949 to 957,172 _834 Position (kb) 953 954 955 956Strain fitness (log2 ratio) -2 -1 0 1 2 3at 952.419 kb on + strandat 952.419 kb on + strandat 952.419 kb on + strandat 952.419 kb on + strandat 952.420 kb on - strandat 952.420 kb on - strandat 952.439 kb on - strandat 952.453 kb on + strandat 952.453 kb on + strandat 952.453 kb on + strandat 952.454 kb on - strandat 952.466 kb on - strandat 952.466 kb on - strandat 952.466 kb on - strandat 952.476 kb on + strandat 952.477 kb on - strandat 952.610 kb on - strand, within Pf1N1B4_831at 952.802 kb on + strandat 953.595 kb on + strandat 953.596 kb on - strandat 953.723 kb on - strand, within Pf1N1B4_833at 953.802 kb on + strand, within Pf1N1B4_833at 954.052 kb on + strand, within Pf1N1B4_833at 954.052 kb on + strand, within Pf1N1B4_833at 954.052 kb on + strand, within Pf1N1B4_833at 954.052 kb on + strand, within Pf1N1B4_833at 954.052 kb on + strand, within Pf1N1B4_833at 954.052 kb on + strand, within Pf1N1B4_833at 954.052 kb on + strand, within Pf1N1B4_833at 954.053 kb on - strand, within Pf1N1B4_833at 954.053 kb on - strand, within Pf1N1B4_833at 954.053 kb on - strand, within Pf1N1B4_833at 954.053 kb on - strand, within Pf1N1B4_833at 954.053 kb on - strand, within Pf1N1B4_833at 954.136 kb on + strand, within Pf1N1B4_833at 954.137 kb on - strand, within Pf1N1B4_833at 954.184 kb on + strand, within Pf1N1B4_833at 954.184 kb on + strand, within Pf1N1B4_833at 954.184 kb on + strand, within Pf1N1B4_833at 954.184 kb on + strand, within Pf1N1B4_833at 954.185 kb on - strand, within Pf1N1B4_833at 954.185 kb on - strand, within Pf1N1B4_833at 954.332 kb on - strand, within Pf1N1B4_833at 954.332 kb on - strand, within Pf1N1B4_833at 954.381 kb on - strand, within Pf1N1B4_833at 954.558 kb on + strand, within Pf1N1B4_833at 954.559 kb on - strand, within Pf1N1B4_833at 954.559 kb on - strand, within Pf1N1B4_833at 954.559 kb on - strand, within Pf1N1B4_833at 954.612 kb on + strand, within Pf1N1B4_833at 954.612 kb on + strand, within Pf1N1B4_833at 954.612 kb on + strand, within Pf1N1B4_833at 954.613 kb on - strand, within Pf1N1B4_833at 954.613 kb on - strandat 954.651 kb on + strand, within Pf1N1B4_833at 955.271 kb on + strand, within Pf1N1B4_833at 955.272 kb on - strand, within Pf1N1B4_833at 955.272 kb on - strand, within Pf1N1B4_833at 955.549 kb on + strand, within Pf1N1B4_833at 955.549 kb on + strand, within Pf1N1B4_833at 955.549 kb on + strand, within Pf1N1B4_833at 955.550 kb on - strand, within Pf1N1B4_833at 955.550 kb on - strand, within Pf1N1B4_833at 955.584 kb on + strand, within Pf1N1B4_833at 955.585 kb on - strand, within Pf1N1B4_833at 955.585 kb on - strand, within Pf1N1B4_833at 955.585 kb on - strand, within Pf1N1B4_833at 955.773 kb on - strandat 955.773 kb on - strandat 955.950 kb on + strandat 955.951 kb on - strandat 956.085 kb on + strand, within Pf1N1B4_834at 956.085 kb on + strand, within Pf1N1B4_834at 956.085 kb on + strand, within Pf1N1B4_834at 956.085 kb on + strand, within Pf1N1B4_834at 956.085 kb on + strand, within Pf1N1B4_834at 956.085 kb on + strand, within Pf1N1B4_834at 956.086 kb on - strand, within Pf1N1B4_834at 956.086 kb on - strand, within Pf1N1B4_834at 956.086 kb on - strand, within Pf1N1B4_834at 956.086 kb on - strand, within Pf1N1B4_834at 956.086 kb on - strand, within Pf1N1B4_834at 956.091 kb on + strand, within Pf1N1B4_834at 956.091 kb on + strand, within Pf1N1B4_834at 956.091 kb on + strand, within Pf1N1B4_834at 956.091 kb on + strand, within Pf1N1B4_834at 956.091 kb on + strand, within Pf1N1B4_834at 956.091 kb on + strand, within Pf1N1B4_834at 956.091 kb on + strand, within Pf1N1B4_834at 956.091 kb on + strand, within Pf1N1B4_834at 956.091 kb on + strand, within Pf1N1B4_834at 956.091 kb on + strand, within Pf1N1B4_834at 956.092 kb on - strand, within Pf1N1B4_834at 956.092 kb on - strand, within Pf1N1B4_834at 956.092 kb on - strand, within Pf1N1B4_834at 956.092 kb on - strand, within Pf1N1B4_834at 956.092 kb on - strandat 956.092 kb on - strand, within Pf1N1B4_834at 956.092 kb on - strand, within Pf1N1B4_834at 956.094 kb on + strand, within Pf1N1B4_834at 956.095 kb on - strand, within Pf1N1B4_834at 956.095 kb on - strand, within Pf1N1B4_834at 956.248 kb on - strand, within Pf1N1B4_834at 956.313 kb on + strand, within Pf1N1B4_834at 956.417 kb on - strand, within Pf1N1B4_834at 956.419 kb on - strand, within Pf1N1B4_834at 956.464 kb on + strand, within Pf1N1B4_834at 956.465 kb on - strandat 956.465 kb on - strand, within Pf1N1B4_834at 956.465 kb on - strand, within Pf1N1B4_834at 956.465 kb on - strand, within Pf1N1B4_834at 956.554 kb on - strand, within Pf1N1B4_834at 956.554 kb on - strand, within Pf1N1B4_834at 956.554 kb on - strand, within Pf1N1B4_834at 956.554 kb on - strand, within Pf1N1B4_834at 956.554 kb on - strand, within Pf1N1B4_834at 956.628 kb on + strand, within Pf1N1B4_834at 956.628 kb on + strand, within Pf1N1B4_834at 956.628 kb on + strand, within Pf1N1B4_834at 956.628 kb on + strand, within Pf1N1B4_834at 956.628 kb on + strand, within Pf1N1B4_834at 956.628 kb on + strandat 956.629 kb on - strand, within Pf1N1B4_834at 956.629 kb on - strand, within Pf1N1B4_834at 956.629 kb on - strand, within Pf1N1B4_834at 956.629 kb on - strand, within Pf1N1B4_834at 956.667 kb on + strand, within Pf1N1B4_834at 956.667 kb on + strand, within Pf1N1B4_834at 956.667 kb on + strand, within Pf1N1B4_834at 956.667 kb on + strandat 956.668 kb on - strand, within Pf1N1B4_834at 956.668 kb on - strand, within Pf1N1B4_834at 956.668 kb on - strand, within Pf1N1B4_834at 956.673 kb on + strand, within Pf1N1B4_834at 956.673 kb on + strand, within Pf1N1B4_834at 956.673 kb on + strand, within Pf1N1B4_834at 956.674 kb on - strand, within Pf1N1B4_834at 956.733 kb on + strand, within Pf1N1B4_834at 956.736 kb on + strand, within Pf1N1B4_834at 956.737 kb on - strand, within Pf1N1B4_834at 956.737 kb on - strand, within Pf1N1B4_834at 956.737 kb on - strand, within Pf1N1B4_834at 956.737 kb on - strand, within Pf1N1B4_834at 956.737 kb on - strand, within Pf1N1B4_834at 956.737 kb on - strand, within Pf1N1B4_834at 956.769 kb on + strand, within Pf1N1B4_834at 956.769 kb on + strand, within Pf1N1B4_834at 956.770 kb on - strand, within Pf1N1B4_834at 956.770 kb on - strand, within Pf1N1B4_834at 956.770 kb on - strand, within Pf1N1B4_834at 956.832 kb on + strand, within Pf1N1B4_834at 956.832 kb on + strand, within Pf1N1B4_834at 956.832 kb on + strand, within Pf1N1B4_834at 956.832 kb on + strand, within Pf1N1B4_834at 956.832 kb on + strand, within Pf1N1B4_834at 956.833 kb on - strand, within Pf1N1B4_834at 956.833 kb on - strand, within Pf1N1B4_834at 956.833 kb on - strand, within Pf1N1B4_834at 956.833 kb on - strand, within Pf1N1B4_834at 956.833 kb on - strand, within Pf1N1B4_834at 956.833 kb on - strand, within Pf1N1B4_834

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml
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952,419 + +0.3
952,419 + -2.0
952,419 + +0.0
952,419 + -0.5
952,420 - -1.5
952,420 - +0.0
952,439 - +0.3
952,453 + -0.8
952,453 + +0.0
952,453 + +0.5
952,454 - -1.8
952,466 - -0.3
952,466 - -0.4
952,466 - -0.5
952,476 + +1.5
952,477 - +2.0
952,610 - Pf1N1B4_831 0.40 +1.0
952,802 + +0.0
953,595 + +0.5
953,596 - -2.4
953,723 - Pf1N1B4_833 0.15 -0.5
953,802 + Pf1N1B4_833 0.18 +1.0
954,052 + Pf1N1B4_833 0.28 +1.0
954,052 + Pf1N1B4_833 0.28 +2.4
954,052 + Pf1N1B4_833 0.28 +0.9
954,052 + Pf1N1B4_833 0.28 +0.3
954,052 + Pf1N1B4_833 0.28 +1.0
954,052 + Pf1N1B4_833 0.28 +0.8
954,052 + Pf1N1B4_833 0.28 +0.6
954,053 - Pf1N1B4_833 0.28 +0.9
954,053 - Pf1N1B4_833 0.28 -0.8
954,053 - Pf1N1B4_833 0.28 -0.3
954,053 - Pf1N1B4_833 0.28 -2.3
954,053 - Pf1N1B4_833 0.28 -2.3
954,136 + Pf1N1B4_833 0.31 +1.6
954,137 - Pf1N1B4_833 0.31 +1.9
954,184 + Pf1N1B4_833 0.33 +0.3
954,184 + Pf1N1B4_833 0.33 +0.6
954,184 + Pf1N1B4_833 0.33 +0.5
954,184 + Pf1N1B4_833 0.33 +0.5
954,185 - Pf1N1B4_833 0.33 -0.4
954,185 - Pf1N1B4_833 0.33 +2.4
954,332 - Pf1N1B4_833 0.39 +0.5
954,332 - Pf1N1B4_833 0.39 +1.4
954,381 - Pf1N1B4_833 0.41 +1.0
954,558 + Pf1N1B4_833 0.48 -0.3
954,559 - Pf1N1B4_833 0.48 +3.2
954,559 - Pf1N1B4_833 0.48 +3.0
954,559 - Pf1N1B4_833 0.48 +1.6
954,612 + Pf1N1B4_833 0.50 -0.0
954,612 + Pf1N1B4_833 0.50 +0.0
954,612 + Pf1N1B4_833 0.50 +0.3
954,613 - Pf1N1B4_833 0.50 +0.4
954,613 - -1.0
954,651 + Pf1N1B4_833 0.51 +2.0
955,271 + Pf1N1B4_833 0.76 +0.6
955,272 - Pf1N1B4_833 0.76 -1.0
955,272 - Pf1N1B4_833 0.76 +0.8
955,549 + Pf1N1B4_833 0.87 -0.3
955,549 + Pf1N1B4_833 0.87 +0.5
955,549 + Pf1N1B4_833 0.87 -0.7
955,550 - Pf1N1B4_833 0.87 +1.7
955,550 - Pf1N1B4_833 0.87 -2.3
955,584 + Pf1N1B4_833 0.88 -0.2
955,585 - Pf1N1B4_833 0.88 -1.5
955,585 - Pf1N1B4_833 0.88 +1.4
955,585 - Pf1N1B4_833 0.88 +1.7
955,773 - +0.5
955,773 - -1.5
955,950 + +0.9
955,951 - +0.8
956,085 + Pf1N1B4_834 0.11 -1.5
956,085 + Pf1N1B4_834 0.11 +0.3
956,085 + Pf1N1B4_834 0.11 +0.0
956,085 + Pf1N1B4_834 0.11 -0.5
956,085 + Pf1N1B4_834 0.11 +0.3
956,085 + Pf1N1B4_834 0.11 -1.5
956,086 - Pf1N1B4_834 0.11 +0.2
956,086 - Pf1N1B4_834 0.11 -2.4
956,086 - Pf1N1B4_834 0.11 -0.9
956,086 - Pf1N1B4_834 0.11 +0.4
956,086 - Pf1N1B4_834 0.11 -0.3
956,091 + Pf1N1B4_834 0.12 -1.3
956,091 + Pf1N1B4_834 0.12 +0.5
956,091 + Pf1N1B4_834 0.12 +0.5
956,091 + Pf1N1B4_834 0.12 +1.3
956,091 + Pf1N1B4_834 0.12 +0.6
956,091 + Pf1N1B4_834 0.12 -0.3
956,091 + Pf1N1B4_834 0.12 +0.6
956,091 + Pf1N1B4_834 0.12 -0.2
956,091 + Pf1N1B4_834 0.12 +1.2
956,091 + Pf1N1B4_834 0.12 -1.5
956,092 - Pf1N1B4_834 0.12 -0.1
956,092 - Pf1N1B4_834 0.12 -0.5
956,092 - Pf1N1B4_834 0.12 +0.9
956,092 - Pf1N1B4_834 0.12 +0.3
956,092 - -1.0
956,092 - Pf1N1B4_834 0.12 +0.3
956,092 - Pf1N1B4_834 0.12 +1.0
956,094 + Pf1N1B4_834 0.12 -2.3
956,095 - Pf1N1B4_834 0.12 +0.0
956,095 - Pf1N1B4_834 0.12 +1.3
956,248 - Pf1N1B4_834 0.24 -1.7
956,313 + Pf1N1B4_834 0.30 +2.0
956,417 - Pf1N1B4_834 0.38 +1.0
956,419 - Pf1N1B4_834 0.38 -0.8
956,464 + Pf1N1B4_834 0.42 +0.5
956,465 - +1.0
956,465 - Pf1N1B4_834 0.42 +0.3
956,465 - Pf1N1B4_834 0.42 -0.1
956,465 - Pf1N1B4_834 0.42 -1.3
956,554 - Pf1N1B4_834 0.49 -1.3
956,554 - Pf1N1B4_834 0.49 +0.6
956,554 - Pf1N1B4_834 0.49 +0.5
956,554 - Pf1N1B4_834 0.49 +1.0
956,554 - Pf1N1B4_834 0.49 +1.8
956,628 + Pf1N1B4_834 0.55 +1.2
956,628 + Pf1N1B4_834 0.55 +0.4
956,628 + Pf1N1B4_834 0.55 +0.7
956,628 + Pf1N1B4_834 0.55 +0.4
956,628 + Pf1N1B4_834 0.55 +1.6
956,628 + +2.4
956,629 - Pf1N1B4_834 0.56 -0.3
956,629 - Pf1N1B4_834 0.56 +1.0
956,629 - Pf1N1B4_834 0.56 +0.6
956,629 - Pf1N1B4_834 0.56 +0.7
956,667 + Pf1N1B4_834 0.59 +0.5
956,667 + Pf1N1B4_834 0.59 +0.5
956,667 + Pf1N1B4_834 0.59 -1.8
956,667 + +0.5
956,668 - Pf1N1B4_834 0.59 -1.0
956,668 - Pf1N1B4_834 0.59 -1.0
956,668 - Pf1N1B4_834 0.59 +0.6
956,673 + Pf1N1B4_834 0.59 -1.5
956,673 + Pf1N1B4_834 0.59 +3.6
956,673 + Pf1N1B4_834 0.59 +0.8
956,674 - Pf1N1B4_834 0.59 +0.0
956,733 + Pf1N1B4_834 0.64 +2.6
956,736 + Pf1N1B4_834 0.64 +1.0
956,737 - Pf1N1B4_834 0.64 +0.6
956,737 - Pf1N1B4_834 0.64 -1.0
956,737 - Pf1N1B4_834 0.64 +0.7
956,737 - Pf1N1B4_834 0.64 +1.4
956,737 - Pf1N1B4_834 0.64 -0.2
956,737 - Pf1N1B4_834 0.64 +0.6
956,769 + Pf1N1B4_834 0.67 +0.3
956,769 + Pf1N1B4_834 0.67 -0.4
956,770 - Pf1N1B4_834 0.67 +0.0
956,770 - Pf1N1B4_834 0.67 +0.5
956,770 - Pf1N1B4_834 0.67 +0.2
956,832 + Pf1N1B4_834 0.72 -1.7
956,832 + Pf1N1B4_834 0.72 -1.1
956,832 + Pf1N1B4_834 0.72 +2.0
956,832 + Pf1N1B4_834 0.72 -1.5
956,832 + Pf1N1B4_834 0.72 +0.9
956,833 - Pf1N1B4_834 0.72 -2.3
956,833 - Pf1N1B4_834 0.72 +2.4
956,833 - Pf1N1B4_834 0.72 +0.8
956,833 - Pf1N1B4_834 0.72 -1.9
956,833 - Pf1N1B4_834 0.72 -0.3
956,833 - Pf1N1B4_834 0.72 -1.0

Or see this region's nucleotide sequence