Experiment: Rifampicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_831 and Pf1N1B4_832 are separated by 254 nucleotides Pf1N1B4_832 and Pf1N1B4_833 are separated by 2 nucleotides
Pf1N1B4_831 - hypothetical protein, at 952,481 to 952,804
_831
Pf1N1B4_832 - hypothetical protein, at 953,059 to 953,349
_832
Pf1N1B4_833 - PTS system, glucose-specific IIA component / Phosphotransferase system, phosphocarrier protein HPr / Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9), at 953,352 to 955,886
_833
Position (kb) 953
954 Strain fitness (log2 ratio) -2
-1
0
1
2 at 952.061 kb on + strand at 952.062 kb on - strand at 952.062 kb on - strand at 952.062 kb on - strand at 952.062 kb on - strand at 952.084 kb on - strand at 952.084 kb on - strand at 952.139 kb on + strand at 952.140 kb on - strand at 952.268 kb on + strand at 952.268 kb on + strand at 952.268 kb on + strand at 952.268 kb on + strand at 952.285 kb on + strand at 952.285 kb on + strand at 952.286 kb on - strand at 952.340 kb on - strand at 952.340 kb on - strand at 952.419 kb on + strand at 952.419 kb on + strand at 952.419 kb on + strand at 952.419 kb on + strand at 952.420 kb on - strand at 952.420 kb on - strand at 952.439 kb on - strand at 952.453 kb on + strand at 952.453 kb on + strand at 952.453 kb on + strand at 952.454 kb on - strand at 952.466 kb on - strand at 952.466 kb on - strand at 952.466 kb on - strand at 952.476 kb on + strand at 952.477 kb on - strand at 952.610 kb on - strand, within Pf1N1B4_831 at 952.802 kb on + strand at 953.595 kb on + strand at 953.596 kb on - strand at 953.723 kb on - strand, within Pf1N1B4_833 at 953.802 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.053 kb on - strand, within Pf1N1B4_833 at 954.053 kb on - strand, within Pf1N1B4_833 at 954.053 kb on - strand, within Pf1N1B4_833 at 954.053 kb on - strand, within Pf1N1B4_833 at 954.053 kb on - strand, within Pf1N1B4_833 at 954.136 kb on + strand, within Pf1N1B4_833 at 954.137 kb on - strand, within Pf1N1B4_833 at 954.184 kb on + strand, within Pf1N1B4_833 at 954.184 kb on + strand, within Pf1N1B4_833 at 954.184 kb on + strand, within Pf1N1B4_833 at 954.184 kb on + strand, within Pf1N1B4_833 at 954.185 kb on - strand, within Pf1N1B4_833 at 954.185 kb on - strand, within Pf1N1B4_833 at 954.332 kb on - strand, within Pf1N1B4_833 at 954.332 kb on - strand, within Pf1N1B4_833
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml remove 952,061 + -1.0 952,062 - +0.6 952,062 - -0.4 952,062 - +0.6 952,062 - +1.2 952,084 - +1.5 952,084 - +0.1 952,139 + +1.0 952,140 - -2.4 952,268 + +0.0 952,268 + -0.5 952,268 + -1.5 952,268 + -1.5 952,285 + +0.3 952,285 + +0.2 952,286 - -0.2 952,340 - +0.0 952,340 - -0.5 952,419 + +0.3 952,419 + -2.0 952,419 + +0.0 952,419 + -0.5 952,420 - -1.5 952,420 - +0.0 952,439 - +0.3 952,453 + -0.8 952,453 + +0.0 952,453 + +0.5 952,454 - -1.8 952,466 - -0.3 952,466 - -0.4 952,466 - -0.5 952,476 + +1.5 952,477 - +2.0 952,610 - Pf1N1B4_831 0.40 +1.0 952,802 + +0.0 953,595 + +0.5 953,596 - -2.4 953,723 - Pf1N1B4_833 0.15 -0.5 953,802 + Pf1N1B4_833 0.18 +1.0 954,052 + Pf1N1B4_833 0.28 +1.0 954,052 + Pf1N1B4_833 0.28 +2.4 954,052 + Pf1N1B4_833 0.28 +0.9 954,052 + Pf1N1B4_833 0.28 +0.3 954,052 + Pf1N1B4_833 0.28 +1.0 954,052 + Pf1N1B4_833 0.28 +0.8 954,052 + Pf1N1B4_833 0.28 +0.6 954,053 - Pf1N1B4_833 0.28 +0.9 954,053 - Pf1N1B4_833 0.28 -0.8 954,053 - Pf1N1B4_833 0.28 -0.3 954,053 - Pf1N1B4_833 0.28 -2.3 954,053 - Pf1N1B4_833 0.28 -2.3 954,136 + Pf1N1B4_833 0.31 +1.6 954,137 - Pf1N1B4_833 0.31 +1.9 954,184 + Pf1N1B4_833 0.33 +0.3 954,184 + Pf1N1B4_833 0.33 +0.6 954,184 + Pf1N1B4_833 0.33 +0.5 954,184 + Pf1N1B4_833 0.33 +0.5 954,185 - Pf1N1B4_833 0.33 -0.4 954,185 - Pf1N1B4_833 0.33 +2.4 954,332 - Pf1N1B4_833 0.39 +0.5 954,332 - Pf1N1B4_833 0.39 +1.4
Or see this region's nucleotide sequence