Experiment: Rifampicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_829 and Pf1N1B4_830 overlap by 4 nucleotides Pf1N1B4_830 and Pf1N1B4_831 are separated by 501 nucleotides
Pf1N1B4_829 - Mobile element protein, at 950,844 to 951,680
_829
Pf1N1B4_830 - Mobile element protein, at 951,677 to 951,979
_830
Pf1N1B4_831 - hypothetical protein, at 952,481 to 952,804
_831
Position (kb) 951
952 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 950.743 kb on - strand at 950.753 kb on - strand at 950.768 kb on - strand at 950.775 kb on - strand at 950.775 kb on - strand at 950.820 kb on + strand at 950.820 kb on + strand at 950.821 kb on - strand at 950.821 kb on - strand at 950.821 kb on - strand at 950.838 kb on - strand at 950.865 kb on - strand at 950.890 kb on + strand at 950.890 kb on + strand at 950.890 kb on + strand at 950.891 kb on - strand at 950.891 kb on - strand at 950.891 kb on - strand at 950.891 kb on - strand at 950.891 kb on - strand at 950.894 kb on + strand at 950.894 kb on + strand at 950.894 kb on + strand at 950.894 kb on + strand at 950.895 kb on - strand at 950.895 kb on - strand at 950.895 kb on - strand at 950.895 kb on - strand at 950.895 kb on - strand at 950.915 kb on - strand at 950.927 kb on - strand at 950.927 kb on - strand at 950.927 kb on - strand at 950.927 kb on - strand at 951.106 kb on + strand, within Pf1N1B4_829 at 951.107 kb on - strand, within Pf1N1B4_829 at 951.265 kb on + strand, within Pf1N1B4_829 at 951.265 kb on + strand, within Pf1N1B4_829 at 951.266 kb on - strand, within Pf1N1B4_829 at 951.266 kb on - strand, within Pf1N1B4_829 at 951.266 kb on - strand, within Pf1N1B4_829 at 951.292 kb on + strand, within Pf1N1B4_829 at 951.292 kb on + strand, within Pf1N1B4_829 at 951.292 kb on + strand, within Pf1N1B4_829 at 951.292 kb on + strand at 951.293 kb on - strand, within Pf1N1B4_829 at 951.293 kb on - strand, within Pf1N1B4_829 at 951.293 kb on - strand, within Pf1N1B4_829 at 951.293 kb on - strand, within Pf1N1B4_829 at 951.293 kb on - strand, within Pf1N1B4_829 at 951.293 kb on - strand, within Pf1N1B4_829 at 951.293 kb on - strand, within Pf1N1B4_829 at 951.391 kb on + strand, within Pf1N1B4_829 at 951.452 kb on + strand at 951.452 kb on + strand, within Pf1N1B4_829 at 951.452 kb on + strand, within Pf1N1B4_829 at 951.452 kb on + strand at 951.452 kb on + strand, within Pf1N1B4_829 at 951.452 kb on + strand, within Pf1N1B4_829 at 951.453 kb on - strand, within Pf1N1B4_829 at 951.554 kb on + strand, within Pf1N1B4_829 at 951.554 kb on + strand, within Pf1N1B4_829 at 951.554 kb on + strand, within Pf1N1B4_829 at 951.555 kb on - strand, within Pf1N1B4_829 at 951.555 kb on - strand, within Pf1N1B4_829 at 951.555 kb on - strand, within Pf1N1B4_829 at 951.605 kb on - strand at 951.605 kb on - strand at 951.729 kb on - strand, within Pf1N1B4_830 at 951.973 kb on + strand at 951.973 kb on + strand at 951.973 kb on + strand at 951.973 kb on + strand at 951.973 kb on + strand at 951.974 kb on - strand at 951.974 kb on - strand at 951.974 kb on - strand at 951.974 kb on - strand at 951.974 kb on - strand at 951.974 kb on - strand at 951.974 kb on - strand at 952.061 kb on + strand at 952.062 kb on - strand at 952.062 kb on - strand at 952.062 kb on - strand at 952.062 kb on - strand at 952.084 kb on - strand at 952.084 kb on - strand at 952.139 kb on + strand at 952.140 kb on - strand at 952.268 kb on + strand at 952.268 kb on + strand at 952.268 kb on + strand at 952.268 kb on + strand at 952.285 kb on + strand at 952.285 kb on + strand at 952.286 kb on - strand at 952.340 kb on - strand at 952.340 kb on - strand at 952.419 kb on + strand at 952.419 kb on + strand at 952.419 kb on + strand at 952.419 kb on + strand at 952.420 kb on - strand at 952.420 kb on - strand at 952.439 kb on - strand at 952.453 kb on + strand at 952.453 kb on + strand at 952.453 kb on + strand at 952.454 kb on - strand at 952.466 kb on - strand at 952.466 kb on - strand at 952.466 kb on - strand at 952.476 kb on + strand at 952.477 kb on - strand at 952.610 kb on - strand, within Pf1N1B4_831 at 952.802 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml remove 950,743 - -1.0 950,753 - +0.6 950,768 - +1.0 950,775 - -0.1 950,775 - +1.0 950,820 + -0.7 950,820 + -1.1 950,821 - -0.7 950,821 - -1.0 950,821 - -0.1 950,838 - +2.2 950,865 - +0.5 950,890 + +1.4 950,890 + -0.5 950,890 + -0.5 950,891 - -0.1 950,891 - -1.8 950,891 - +1.2 950,891 - -1.3 950,891 - +0.1 950,894 + +0.2 950,894 + -1.4 950,894 + -1.3 950,894 + -1.3 950,895 - +0.2 950,895 - +0.0 950,895 - -1.5 950,895 - +2.3 950,895 - -0.3 950,915 - -0.3 950,927 - -1.3 950,927 - -0.5 950,927 - -1.0 950,927 - +0.0 951,106 + Pf1N1B4_829 0.31 -1.1 951,107 - Pf1N1B4_829 0.31 -1.3 951,265 + Pf1N1B4_829 0.50 -1.8 951,265 + Pf1N1B4_829 0.50 -1.0 951,266 - Pf1N1B4_829 0.50 +1.3 951,266 - Pf1N1B4_829 0.50 +0.9 951,266 - Pf1N1B4_829 0.50 +0.2 951,292 + Pf1N1B4_829 0.54 +0.4 951,292 + Pf1N1B4_829 0.54 -2.1 951,292 + Pf1N1B4_829 0.54 +0.7 951,292 + +0.0 951,293 - Pf1N1B4_829 0.54 -2.8 951,293 - Pf1N1B4_829 0.54 -0.5 951,293 - Pf1N1B4_829 0.54 -0.4 951,293 - Pf1N1B4_829 0.54 +0.9 951,293 - Pf1N1B4_829 0.54 +0.4 951,293 - Pf1N1B4_829 0.54 +0.7 951,293 - Pf1N1B4_829 0.54 +0.5 951,391 + Pf1N1B4_829 0.65 +0.5 951,452 + +0.0 951,452 + Pf1N1B4_829 0.73 -0.1 951,452 + Pf1N1B4_829 0.73 -0.8 951,452 + +0.0 951,452 + Pf1N1B4_829 0.73 +1.5 951,452 + Pf1N1B4_829 0.73 -0.5 951,453 - Pf1N1B4_829 0.73 -0.5 951,554 + Pf1N1B4_829 0.85 -1.0 951,554 + Pf1N1B4_829 0.85 -0.3 951,554 + Pf1N1B4_829 0.85 -1.5 951,555 - Pf1N1B4_829 0.85 -0.8 951,555 - Pf1N1B4_829 0.85 -1.3 951,555 - Pf1N1B4_829 0.85 +1.0 951,605 - +1.0 951,605 - -0.5 951,729 - Pf1N1B4_830 0.17 +1.0 951,973 + -0.5 951,973 + -0.2 951,973 + +1.8 951,973 + +0.6 951,973 + -3.0 951,974 - -0.0 951,974 - -0.8 951,974 - +0.0 951,974 - +0.2 951,974 - +0.0 951,974 - -0.2 951,974 - +0.3 952,061 + -1.0 952,062 - +0.6 952,062 - -0.4 952,062 - +0.6 952,062 - +1.2 952,084 - +1.5 952,084 - +0.1 952,139 + +1.0 952,140 - -2.4 952,268 + +0.0 952,268 + -0.5 952,268 + -1.5 952,268 + -1.5 952,285 + +0.3 952,285 + +0.2 952,286 - -0.2 952,340 - +0.0 952,340 - -0.5 952,419 + +0.3 952,419 + -2.0 952,419 + +0.0 952,419 + -0.5 952,420 - -1.5 952,420 - +0.0 952,439 - +0.3 952,453 + -0.8 952,453 + +0.0 952,453 + +0.5 952,454 - -1.8 952,466 - -0.3 952,466 - -0.4 952,466 - -0.5 952,476 + +1.5 952,477 - +2.0 952,610 - Pf1N1B4_831 0.40 +1.0 952,802 + +0.0
Or see this region's nucleotide sequence