Experiment: Rifampicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_826 and Pf1N1B4_827 are separated by 129 nucleotides Pf1N1B4_827 and Pf1N1B4_828 overlap by 1 nucleotides
Pf1N1B4_826 - tRNA (5-methoxyuridine) 34 synthase, at 947,409 to 948,365
_826
Pf1N1B4_827 - tRNA-specific adenosine-34 deaminase (EC 3.5.4.-), at 948,495 to 948,992
_827
Pf1N1B4_828 - Multicopper oxidase, at 948,992 to 950,368
_828
Position (kb) 948
949 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 947.799 kb on + strand, within Pf1N1B4_826 at 947.802 kb on + strand at 947.802 kb on + strand, within Pf1N1B4_826 at 947.802 kb on + strand, within Pf1N1B4_826 at 947.802 kb on + strand, within Pf1N1B4_826 at 947.802 kb on + strand, within Pf1N1B4_826 at 947.802 kb on + strand, within Pf1N1B4_826 at 947.803 kb on - strand, within Pf1N1B4_826 at 947.803 kb on - strand, within Pf1N1B4_826 at 947.803 kb on - strand, within Pf1N1B4_826 at 947.803 kb on - strand, within Pf1N1B4_826 at 947.803 kb on - strand, within Pf1N1B4_826 at 947.803 kb on - strand, within Pf1N1B4_826 at 947.895 kb on + strand, within Pf1N1B4_826 at 947.895 kb on + strand at 947.896 kb on - strand, within Pf1N1B4_826 at 947.995 kb on - strand, within Pf1N1B4_826 at 948.267 kb on + strand at 948.267 kb on + strand, within Pf1N1B4_826 at 948.267 kb on + strand, within Pf1N1B4_826 at 948.267 kb on + strand, within Pf1N1B4_826 at 948.267 kb on + strand, within Pf1N1B4_826 at 948.268 kb on - strand, within Pf1N1B4_826 at 948.363 kb on + strand at 948.363 kb on + strand at 948.363 kb on + strand at 948.388 kb on + strand at 948.388 kb on + strand at 948.389 kb on - strand at 948.497 kb on - strand at 948.497 kb on - strand at 949.120 kb on - strand at 949.120 kb on - strand at 949.120 kb on - strand at 949.120 kb on - strand at 949.135 kb on - strand, within Pf1N1B4_828 at 949.135 kb on - strand, within Pf1N1B4_828 at 949.237 kb on - strand, within Pf1N1B4_828 at 949.237 kb on - strand, within Pf1N1B4_828 at 949.561 kb on + strand, within Pf1N1B4_828 at 949.561 kb on + strand, within Pf1N1B4_828 at 949.561 kb on + strand, within Pf1N1B4_828 at 949.561 kb on + strand, within Pf1N1B4_828 at 949.562 kb on - strand at 949.562 kb on - strand, within Pf1N1B4_828 at 949.632 kb on + strand at 949.632 kb on + strand, within Pf1N1B4_828 at 949.632 kb on + strand, within Pf1N1B4_828 at 949.632 kb on + strand, within Pf1N1B4_828 at 949.632 kb on + strand, within Pf1N1B4_828 at 949.633 kb on - strand, within Pf1N1B4_828 at 949.633 kb on - strand, within Pf1N1B4_828 at 949.633 kb on - strand, within Pf1N1B4_828 at 949.633 kb on - strand, within Pf1N1B4_828 at 949.668 kb on + strand, within Pf1N1B4_828 at 949.965 kb on + strand, within Pf1N1B4_828 at 949.966 kb on - strand, within Pf1N1B4_828 at 949.966 kb on - strand, within Pf1N1B4_828
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml remove 947,799 + Pf1N1B4_826 0.41 +1.4 947,802 + +0.0 947,802 + Pf1N1B4_826 0.41 +0.0 947,802 + Pf1N1B4_826 0.41 -0.8 947,802 + Pf1N1B4_826 0.41 -1.9 947,802 + Pf1N1B4_826 0.41 +0.7 947,802 + Pf1N1B4_826 0.41 +0.5 947,803 - Pf1N1B4_826 0.41 -1.1 947,803 - Pf1N1B4_826 0.41 +0.0 947,803 - Pf1N1B4_826 0.41 -2.8 947,803 - Pf1N1B4_826 0.41 -1.6 947,803 - Pf1N1B4_826 0.41 -0.1 947,803 - Pf1N1B4_826 0.41 -1.0 947,895 + Pf1N1B4_826 0.51 -0.6 947,895 + +2.6 947,896 - Pf1N1B4_826 0.51 -0.8 947,995 - Pf1N1B4_826 0.61 -2.3 948,267 + +0.0 948,267 + Pf1N1B4_826 0.90 -0.4 948,267 + Pf1N1B4_826 0.90 +1.4 948,267 + Pf1N1B4_826 0.90 +0.5 948,267 + Pf1N1B4_826 0.90 -1.6 948,268 - Pf1N1B4_826 0.90 -0.4 948,363 + +0.2 948,363 + -0.6 948,363 + +0.6 948,388 + -0.4 948,388 + +2.5 948,389 - +1.0 948,497 - -1.0 948,497 - +0.0 949,120 - +0.4 949,120 - +0.2 949,120 - +0.7 949,120 - -1.3 949,135 - Pf1N1B4_828 0.10 -1.4 949,135 - Pf1N1B4_828 0.10 +0.0 949,237 - Pf1N1B4_828 0.18 -0.3 949,237 - Pf1N1B4_828 0.18 -0.7 949,561 + Pf1N1B4_828 0.41 +1.5 949,561 + Pf1N1B4_828 0.41 -1.6 949,561 + Pf1N1B4_828 0.41 +0.6 949,561 + Pf1N1B4_828 0.41 -0.6 949,562 - +1.0 949,562 - Pf1N1B4_828 0.41 -0.3 949,632 + -0.6 949,632 + Pf1N1B4_828 0.46 +0.8 949,632 + Pf1N1B4_828 0.46 +0.7 949,632 + Pf1N1B4_828 0.46 +0.0 949,632 + Pf1N1B4_828 0.46 +2.8 949,633 - Pf1N1B4_828 0.47 -2.8 949,633 - Pf1N1B4_828 0.47 -2.1 949,633 - Pf1N1B4_828 0.47 +0.0 949,633 - Pf1N1B4_828 0.47 -0.2 949,668 + Pf1N1B4_828 0.49 -1.8 949,965 + Pf1N1B4_828 0.71 -0.3 949,966 - Pf1N1B4_828 0.71 -0.3 949,966 - Pf1N1B4_828 0.71 +0.3
Or see this region's nucleotide sequence