Experiment: Rifampicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_823 and Pf1N1B4_824 are separated by 2 nucleotides Pf1N1B4_824 and Pf1N1B4_825 are separated by 150 nucleotides Pf1N1B4_825 and Pf1N1B4_826 overlap by 4 nucleotides
Pf1N1B4_823 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 945,479 to 945,871
_823
Pf1N1B4_824 - POSSIBLE MEMBRANE PROTEIN, at 945,874 to 946,518
_824
Pf1N1B4_825 - tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase, at 946,669 to 947,412
_825
Pf1N1B4_826 - tRNA (5-methoxyuridine) 34 synthase, at 947,409 to 948,365
_826
Position (kb) 946
947
948 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 945.704 kb on + strand, within Pf1N1B4_823 at 945.803 kb on + strand, within Pf1N1B4_823 at 945.803 kb on + strand, within Pf1N1B4_823 at 945.803 kb on + strand, within Pf1N1B4_823 at 945.804 kb on - strand, within Pf1N1B4_823 at 946.135 kb on + strand, within Pf1N1B4_824 at 946.135 kb on + strand, within Pf1N1B4_824 at 946.412 kb on + strand, within Pf1N1B4_824 at 946.413 kb on - strand, within Pf1N1B4_824 at 946.413 kb on - strand, within Pf1N1B4_824 at 946.435 kb on + strand, within Pf1N1B4_824 at 946.435 kb on + strand, within Pf1N1B4_824 at 946.435 kb on + strand, within Pf1N1B4_824 at 946.436 kb on - strand, within Pf1N1B4_824 at 946.436 kb on - strand, within Pf1N1B4_824 at 946.436 kb on - strand, within Pf1N1B4_824 at 946.453 kb on + strand, within Pf1N1B4_824 at 946.453 kb on + strand, within Pf1N1B4_824 at 946.454 kb on - strand at 946.852 kb on + strand, within Pf1N1B4_825 at 946.852 kb on + strand, within Pf1N1B4_825 at 946.938 kb on + strand, within Pf1N1B4_825 at 946.972 kb on + strand, within Pf1N1B4_825 at 946.973 kb on - strand, within Pf1N1B4_825 at 947.251 kb on + strand, within Pf1N1B4_825 at 947.383 kb on - strand at 947.799 kb on + strand, within Pf1N1B4_826 at 947.802 kb on + strand at 947.802 kb on + strand, within Pf1N1B4_826 at 947.802 kb on + strand, within Pf1N1B4_826 at 947.802 kb on + strand, within Pf1N1B4_826 at 947.802 kb on + strand, within Pf1N1B4_826 at 947.802 kb on + strand, within Pf1N1B4_826 at 947.803 kb on - strand, within Pf1N1B4_826 at 947.803 kb on - strand, within Pf1N1B4_826 at 947.803 kb on - strand, within Pf1N1B4_826 at 947.803 kb on - strand, within Pf1N1B4_826 at 947.803 kb on - strand, within Pf1N1B4_826 at 947.803 kb on - strand, within Pf1N1B4_826 at 947.895 kb on + strand, within Pf1N1B4_826 at 947.895 kb on + strand at 947.896 kb on - strand, within Pf1N1B4_826 at 947.995 kb on - strand, within Pf1N1B4_826 at 948.267 kb on + strand at 948.267 kb on + strand, within Pf1N1B4_826 at 948.267 kb on + strand, within Pf1N1B4_826 at 948.267 kb on + strand, within Pf1N1B4_826 at 948.267 kb on + strand, within Pf1N1B4_826 at 948.268 kb on - strand, within Pf1N1B4_826 at 948.363 kb on + strand at 948.363 kb on + strand at 948.363 kb on + strand at 948.388 kb on + strand at 948.388 kb on + strand at 948.389 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml remove 945,704 + Pf1N1B4_823 0.57 -0.8 945,803 + Pf1N1B4_823 0.82 -0.8 945,803 + Pf1N1B4_823 0.82 +1.6 945,803 + Pf1N1B4_823 0.82 -0.9 945,804 - Pf1N1B4_823 0.83 -1.3 946,135 + Pf1N1B4_824 0.40 +0.6 946,135 + Pf1N1B4_824 0.40 +1.0 946,412 + Pf1N1B4_824 0.83 +0.9 946,413 - Pf1N1B4_824 0.84 -0.6 946,413 - Pf1N1B4_824 0.84 -0.7 946,435 + Pf1N1B4_824 0.87 +0.5 946,435 + Pf1N1B4_824 0.87 -1.3 946,435 + Pf1N1B4_824 0.87 +1.0 946,436 - Pf1N1B4_824 0.87 -0.3 946,436 - Pf1N1B4_824 0.87 -1.4 946,436 - Pf1N1B4_824 0.87 -0.8 946,453 + Pf1N1B4_824 0.90 -0.7 946,453 + Pf1N1B4_824 0.90 -1.1 946,454 - -2.0 946,852 + Pf1N1B4_825 0.25 -1.8 946,852 + Pf1N1B4_825 0.25 -0.0 946,938 + Pf1N1B4_825 0.36 -1.3 946,972 + Pf1N1B4_825 0.41 -0.5 946,973 - Pf1N1B4_825 0.41 -0.6 947,251 + Pf1N1B4_825 0.78 -2.8 947,383 - +1.0 947,799 + Pf1N1B4_826 0.41 +1.4 947,802 + +0.0 947,802 + Pf1N1B4_826 0.41 +0.0 947,802 + Pf1N1B4_826 0.41 -0.8 947,802 + Pf1N1B4_826 0.41 -1.9 947,802 + Pf1N1B4_826 0.41 +0.7 947,802 + Pf1N1B4_826 0.41 +0.5 947,803 - Pf1N1B4_826 0.41 -1.1 947,803 - Pf1N1B4_826 0.41 +0.0 947,803 - Pf1N1B4_826 0.41 -2.8 947,803 - Pf1N1B4_826 0.41 -1.6 947,803 - Pf1N1B4_826 0.41 -0.1 947,803 - Pf1N1B4_826 0.41 -1.0 947,895 + Pf1N1B4_826 0.51 -0.6 947,895 + +2.6 947,896 - Pf1N1B4_826 0.51 -0.8 947,995 - Pf1N1B4_826 0.61 -2.3 948,267 + +0.0 948,267 + Pf1N1B4_826 0.90 -0.4 948,267 + Pf1N1B4_826 0.90 +1.4 948,267 + Pf1N1B4_826 0.90 +0.5 948,267 + Pf1N1B4_826 0.90 -1.6 948,268 - Pf1N1B4_826 0.90 -0.4 948,363 + +0.2 948,363 + -0.6 948,363 + +0.6 948,388 + -0.4 948,388 + +2.5 948,389 - +1.0
Or see this region's nucleotide sequence