Experiment: Rifampicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_764 and Pf1N1B4_765 are separated by 116 nucleotides Pf1N1B4_765 and Pf1N1B4_766 are separated by 413 nucleotides
Pf1N1B4_764 - Uncharacterized isomerase yddE, PhzC-PhzF family, at 868,318 to 869,100
_764
Pf1N1B4_765 - Cys-tRNA(Pro) deacylase YbaK, at 869,217 to 869,687
_765
Pf1N1B4_766 - Glycerol uptake facilitator protein, at 870,101 to 870,910
_766
Position (kb) 869
870 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 868.249 kb on - strand at 868.274 kb on + strand at 868.275 kb on - strand at 868.275 kb on - strand at 868.275 kb on - strand at 868.330 kb on + strand at 868.331 kb on - strand at 868.331 kb on - strand at 868.331 kb on - strand at 868.331 kb on - strand at 868.427 kb on + strand, within Pf1N1B4_764 at 868.428 kb on - strand, within Pf1N1B4_764 at 868.654 kb on + strand, within Pf1N1B4_764 at 868.655 kb on - strand, within Pf1N1B4_764 at 868.844 kb on + strand, within Pf1N1B4_764 at 868.844 kb on + strand, within Pf1N1B4_764 at 868.845 kb on - strand, within Pf1N1B4_764 at 868.845 kb on - strand, within Pf1N1B4_764 at 868.845 kb on - strand, within Pf1N1B4_764 at 868.845 kb on - strand, within Pf1N1B4_764 at 868.845 kb on - strand, within Pf1N1B4_764 at 868.845 kb on - strand, within Pf1N1B4_764 at 868.862 kb on + strand, within Pf1N1B4_764 at 868.863 kb on - strand, within Pf1N1B4_764 at 868.863 kb on - strand, within Pf1N1B4_764 at 868.863 kb on - strand, within Pf1N1B4_764 at 868.914 kb on + strand, within Pf1N1B4_764 at 869.092 kb on + strand at 869.093 kb on - strand at 869.093 kb on - strand at 869.093 kb on - strand at 869.183 kb on + strand at 869.184 kb on - strand at 869.184 kb on - strand at 869.184 kb on - strand at 869.184 kb on - strand at 869.184 kb on - strand at 869.184 kb on - strand at 869.355 kb on - strand, within Pf1N1B4_765 at 869.355 kb on - strand, within Pf1N1B4_765 at 869.602 kb on + strand, within Pf1N1B4_765 at 869.602 kb on + strand, within Pf1N1B4_765 at 869.602 kb on + strand, within Pf1N1B4_765 at 869.602 kb on + strand at 869.629 kb on + strand, within Pf1N1B4_765 at 869.629 kb on + strand, within Pf1N1B4_765 at 869.736 kb on - strand at 869.751 kb on - strand at 869.763 kb on + strand at 869.763 kb on + strand at 869.763 kb on + strand at 869.763 kb on + strand at 869.763 kb on + strand at 869.764 kb on - strand at 869.764 kb on - strand at 869.764 kb on - strand at 869.764 kb on - strand at 869.764 kb on - strand at 869.764 kb on - strand at 869.764 kb on - strand at 869.771 kb on + strand at 869.772 kb on - strand at 869.855 kb on + strand at 869.936 kb on + strand at 869.936 kb on + strand at 869.936 kb on + strand at 870.073 kb on - strand at 870.332 kb on + strand, within Pf1N1B4_766 at 870.332 kb on + strand at 870.333 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml remove 868,249 - -1.6 868,274 + -1.0 868,275 - -1.6 868,275 - -0.6 868,275 - +1.8 868,330 + -0.0 868,331 - -2.5 868,331 - -0.0 868,331 - -0.3 868,331 - -0.3 868,427 + Pf1N1B4_764 0.14 -0.8 868,428 - Pf1N1B4_764 0.14 +0.1 868,654 + Pf1N1B4_764 0.43 -0.8 868,655 - Pf1N1B4_764 0.43 +0.1 868,844 + Pf1N1B4_764 0.67 -1.3 868,844 + Pf1N1B4_764 0.67 -0.3 868,845 - Pf1N1B4_764 0.67 -1.0 868,845 - Pf1N1B4_764 0.67 -2.2 868,845 - Pf1N1B4_764 0.67 -2.0 868,845 - Pf1N1B4_764 0.67 -0.8 868,845 - Pf1N1B4_764 0.67 -1.3 868,845 - Pf1N1B4_764 0.67 -2.0 868,862 + Pf1N1B4_764 0.69 -0.3 868,863 - Pf1N1B4_764 0.70 +0.7 868,863 - Pf1N1B4_764 0.70 +1.0 868,863 - Pf1N1B4_764 0.70 -1.6 868,914 + Pf1N1B4_764 0.76 -0.6 869,092 + -2.0 869,093 - -0.1 869,093 - -0.6 869,093 - +1.4 869,183 + +0.2 869,184 - +1.2 869,184 - -2.5 869,184 - +0.1 869,184 - +1.6 869,184 - -0.0 869,184 - -0.6 869,355 - Pf1N1B4_765 0.29 -1.0 869,355 - Pf1N1B4_765 0.29 +0.9 869,602 + Pf1N1B4_765 0.82 -1.8 869,602 + Pf1N1B4_765 0.82 +3.0 869,602 + Pf1N1B4_765 0.82 -1.6 869,602 + -0.6 869,629 + Pf1N1B4_765 0.87 -1.3 869,629 + Pf1N1B4_765 0.87 -1.3 869,736 - -1.1 869,751 - -1.6 869,763 + -1.9 869,763 + +1.0 869,763 + -0.6 869,763 + -1.3 869,763 + -1.4 869,764 - -0.0 869,764 - -2.2 869,764 - -0.0 869,764 - -2.5 869,764 - +1.4 869,764 - +1.4 869,764 - +0.2 869,771 + -1.0 869,772 - -0.0 869,855 + -0.0 869,936 + +1.2 869,936 + -0.7 869,936 + -0.5 870,073 - +0.8 870,332 + Pf1N1B4_766 0.29 +1.5 870,332 + -1.0 870,333 - +1.0
Or see this region's nucleotide sequence