Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_745
Experiment: Rifampicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Rifampicin 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
848,430 | + | -0.6 | |||
848,430 | + | +1.3 | |||
848,430 | + | +0.1 | |||
848,430 | + | +1.0 | |||
848,430 | + | +0.2 | |||
848,431 | - | -0.0 | |||
848,431 | - | +2.0 | |||
848,450 | + | -0.0 | |||
848,560 | - | -0.3 | |||
848,560 | - | +3.3 | |||
848,586 | + | -0.3 | |||
848,714 | - | Pf1N1B4_746 | 0.26 | +1.6 | |
848,817 | + | Pf1N1B4_746 | 0.43 | -1.3 | |
848,817 | + | Pf1N1B4_746 | 0.43 | +1.2 | |
848,818 | - | Pf1N1B4_746 | 0.43 | -1.3 | |
849,052 | - | Pf1N1B4_746 | 0.82 | +1.0 | |
849,177 | + | -0.2 | |||
849,177 | + | -1.7 | |||
849,178 | - | +0.7 | |||
849,178 | - | -1.0 | |||
849,178 | - | -1.3 | |||
849,178 | - | -0.8 | |||
849,178 | - | -2.6 | |||
849,178 | - | +0.3 | |||
849,181 | - | -1.5 | |||
849,181 | - | -0.8 | |||
849,181 | - | +0.7 | |||
849,269 | + | +1.4 | |||
849,269 | + | +1.0 | |||
849,269 | + | -1.0 | |||
849,270 | - | +0.8 | |||
849,270 | - | +2.0 | |||
849,270 | - | +1.0 | |||
849,270 | - | +0.6 | |||
849,270 | - | -0.1 | |||
849,270 | - | -1.6 | |||
849,270 | - | -0.0 | |||
849,270 | - | -1.8 | |||
849,270 | - | -0.5 | |||
849,270 | - | +0.1 | |||
849,270 | - | -0.9 | |||
849,324 | - | +0.2 | |||
849,338 | + | -1.6 | |||
849,338 | + | -0.0 | |||
849,339 | - | +1.1 | |||
849,339 | - | +2.3 | |||
849,340 | + | -3.2 | |||
849,340 | + | +1.0 | |||
849,340 | + | -0.0 | |||
849,341 | - | -1.2 | |||
849,391 | + | -1.7 | |||
849,391 | + | -1.3 |
Or see this region's nucleotide sequence