Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_745

Experiment: Rifampicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_744 and Pf1N1B4_745 overlap by 4 nucleotidesPf1N1B4_745 and Pf1N1B4_746 are separated by 116 nucleotides Pf1N1B4_744 - Dihydroorotase (EC 3.5.2.3), at 846,721 to 847,767 _744 Pf1N1B4_745 - Ribonuclease T (EC 3.1.13.-), at 847,764 to 848,441 _745 Pf1N1B4_746 - Alkyl hydroperoxide reductase subunit C-like protein, at 848,558 to 849,160 _746 Position (kb) 847 848 849Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 848.430 kb on + strandat 848.430 kb on + strandat 848.430 kb on + strandat 848.430 kb on + strandat 848.430 kb on + strandat 848.431 kb on - strandat 848.431 kb on - strandat 848.450 kb on + strandat 848.560 kb on - strandat 848.560 kb on - strandat 848.586 kb on + strandat 848.714 kb on - strand, within Pf1N1B4_746at 848.817 kb on + strand, within Pf1N1B4_746at 848.817 kb on + strand, within Pf1N1B4_746at 848.818 kb on - strand, within Pf1N1B4_746at 849.052 kb on - strand, within Pf1N1B4_746at 849.177 kb on + strandat 849.177 kb on + strandat 849.178 kb on - strandat 849.178 kb on - strandat 849.178 kb on - strandat 849.178 kb on - strandat 849.178 kb on - strandat 849.178 kb on - strandat 849.181 kb on - strandat 849.181 kb on - strandat 849.181 kb on - strandat 849.269 kb on + strandat 849.269 kb on + strandat 849.269 kb on + strandat 849.270 kb on - strandat 849.270 kb on - strandat 849.270 kb on - strandat 849.270 kb on - strandat 849.270 kb on - strandat 849.270 kb on - strandat 849.270 kb on - strandat 849.270 kb on - strandat 849.270 kb on - strandat 849.270 kb on - strandat 849.270 kb on - strandat 849.324 kb on - strandat 849.338 kb on + strandat 849.338 kb on + strandat 849.339 kb on - strandat 849.339 kb on - strandat 849.340 kb on + strandat 849.340 kb on + strandat 849.340 kb on + strandat 849.341 kb on - strandat 849.391 kb on + strandat 849.391 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml
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848,430 + -0.6
848,430 + +1.3
848,430 + +0.1
848,430 + +1.0
848,430 + +0.2
848,431 - -0.0
848,431 - +2.0
848,450 + -0.0
848,560 - -0.3
848,560 - +3.3
848,586 + -0.3
848,714 - Pf1N1B4_746 0.26 +1.6
848,817 + Pf1N1B4_746 0.43 -1.3
848,817 + Pf1N1B4_746 0.43 +1.2
848,818 - Pf1N1B4_746 0.43 -1.3
849,052 - Pf1N1B4_746 0.82 +1.0
849,177 + -0.2
849,177 + -1.7
849,178 - +0.7
849,178 - -1.0
849,178 - -1.3
849,178 - -0.8
849,178 - -2.6
849,178 - +0.3
849,181 - -1.5
849,181 - -0.8
849,181 - +0.7
849,269 + +1.4
849,269 + +1.0
849,269 + -1.0
849,270 - +0.8
849,270 - +2.0
849,270 - +1.0
849,270 - +0.6
849,270 - -0.1
849,270 - -1.6
849,270 - -0.0
849,270 - -1.8
849,270 - -0.5
849,270 - +0.1
849,270 - -0.9
849,324 - +0.2
849,338 + -1.6
849,338 + -0.0
849,339 - +1.1
849,339 - +2.3
849,340 + -3.2
849,340 + +1.0
849,340 + -0.0
849,341 - -1.2
849,391 + -1.7
849,391 + -1.3

Or see this region's nucleotide sequence