Experiment: Rifampicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_744 and Pf1N1B4_745 overlap by 4 nucleotides Pf1N1B4_745 and Pf1N1B4_746 are separated by 116 nucleotides
Pf1N1B4_744 - Dihydroorotase (EC 3.5.2.3), at 846,721 to 847,767
_744
Pf1N1B4_745 - Ribonuclease T (EC 3.1.13.-), at 847,764 to 848,441
_745
Pf1N1B4_746 - Alkyl hydroperoxide reductase subunit C-like protein, at 848,558 to 849,160
_746
Position (kb)
847
848
849 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 848.430 kb on + strand at 848.430 kb on + strand at 848.430 kb on + strand at 848.430 kb on + strand at 848.430 kb on + strand at 848.431 kb on - strand at 848.431 kb on - strand at 848.450 kb on + strand at 848.560 kb on - strand at 848.560 kb on - strand at 848.586 kb on + strand at 848.714 kb on - strand, within Pf1N1B4_746 at 848.817 kb on + strand, within Pf1N1B4_746 at 848.817 kb on + strand, within Pf1N1B4_746 at 848.818 kb on - strand, within Pf1N1B4_746 at 849.052 kb on - strand, within Pf1N1B4_746 at 849.177 kb on + strand at 849.177 kb on + strand at 849.178 kb on - strand at 849.178 kb on - strand at 849.178 kb on - strand at 849.178 kb on - strand at 849.178 kb on - strand at 849.178 kb on - strand at 849.181 kb on - strand at 849.181 kb on - strand at 849.181 kb on - strand at 849.269 kb on + strand at 849.269 kb on + strand at 849.269 kb on + strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.324 kb on - strand at 849.338 kb on + strand at 849.338 kb on + strand at 849.339 kb on - strand at 849.339 kb on - strand at 849.340 kb on + strand at 849.340 kb on + strand at 849.340 kb on + strand at 849.341 kb on - strand at 849.391 kb on + strand at 849.391 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml remove 848,430 + -0.6 848,430 + +1.3 848,430 + +0.1 848,430 + +1.0 848,430 + +0.2 848,431 - -0.0 848,431 - +2.0 848,450 + -0.0 848,560 - -0.3 848,560 - +3.3 848,586 + -0.3 848,714 - Pf1N1B4_746 0.26 +1.6 848,817 + Pf1N1B4_746 0.43 -1.3 848,817 + Pf1N1B4_746 0.43 +1.2 848,818 - Pf1N1B4_746 0.43 -1.3 849,052 - Pf1N1B4_746 0.82 +1.0 849,177 + -0.2 849,177 + -1.7 849,178 - +0.7 849,178 - -1.0 849,178 - -1.3 849,178 - -0.8 849,178 - -2.6 849,178 - +0.3 849,181 - -1.5 849,181 - -0.8 849,181 - +0.7 849,269 + +1.4 849,269 + +1.0 849,269 + -1.0 849,270 - +0.8 849,270 - +2.0 849,270 - +1.0 849,270 - +0.6 849,270 - -0.1 849,270 - -1.6 849,270 - -0.0 849,270 - -1.8 849,270 - -0.5 849,270 - +0.1 849,270 - -0.9 849,324 - +0.2 849,338 + -1.6 849,338 + -0.0 849,339 - +1.1 849,339 - +2.3 849,340 + -3.2 849,340 + +1.0 849,340 + -0.0 849,341 - -1.2 849,391 + -1.7 849,391 + -1.3
Or see this region's nucleotide sequence