Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_718

Experiment: Rifampicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_717 and Pf1N1B4_718 are separated by 14 nucleotidesPf1N1B4_718 and Pf1N1B4_719 are separated by 225 nucleotides Pf1N1B4_717 - Iron-regulated protein A precursor, at 817,703 to 818,767 _717 Pf1N1B4_718 - outer membrane component of uptake system, probably for ferrous iron (from data), at 818,782 to 819,882 _718 Pf1N1B4_719 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 820,108 to 821,256 _719 Position (kb) 818 819 820Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 817.823 kb on + strand, within Pf1N1B4_717at 817.824 kb on - strand, within Pf1N1B4_717at 818.101 kb on - strand, within Pf1N1B4_717at 818.129 kb on + strand, within Pf1N1B4_717at 818.129 kb on + strand, within Pf1N1B4_717at 818.129 kb on + strandat 818.129 kb on + strand, within Pf1N1B4_717at 818.129 kb on + strand, within Pf1N1B4_717at 818.129 kb on + strandat 818.129 kb on + strand, within Pf1N1B4_717at 818.129 kb on + strand, within Pf1N1B4_717at 818.129 kb on + strand, within Pf1N1B4_717at 818.129 kb on + strand, within Pf1N1B4_717at 818.130 kb on - strand, within Pf1N1B4_717at 818.130 kb on - strand, within Pf1N1B4_717at 818.130 kb on - strand, within Pf1N1B4_717at 818.130 kb on - strand, within Pf1N1B4_717at 818.130 kb on - strand, within Pf1N1B4_717at 818.130 kb on - strand, within Pf1N1B4_717at 818.130 kb on - strand, within Pf1N1B4_717at 818.130 kb on - strand, within Pf1N1B4_717at 818.183 kb on + strand, within Pf1N1B4_717at 818.183 kb on + strand, within Pf1N1B4_717at 818.183 kb on + strand, within Pf1N1B4_717at 818.183 kb on + strand, within Pf1N1B4_717at 818.184 kb on - strand, within Pf1N1B4_717at 818.184 kb on - strand, within Pf1N1B4_717at 818.184 kb on - strand, within Pf1N1B4_717at 818.580 kb on - strand, within Pf1N1B4_717at 818.672 kb on + strandat 818.672 kb on + strandat 818.672 kb on + strandat 818.672 kb on + strandat 818.918 kb on - strand, within Pf1N1B4_718at 819.011 kb on + strand, within Pf1N1B4_718at 819.050 kb on - strand, within Pf1N1B4_718at 819.115 kb on + strand, within Pf1N1B4_718at 819.115 kb on + strand, within Pf1N1B4_718at 819.154 kb on + strand, within Pf1N1B4_718at 819.155 kb on - strand, within Pf1N1B4_718at 819.205 kb on + strand, within Pf1N1B4_718at 819.205 kb on + strand, within Pf1N1B4_718at 819.206 kb on - strand, within Pf1N1B4_718at 819.206 kb on - strand, within Pf1N1B4_718at 819.207 kb on + strand, within Pf1N1B4_718at 819.207 kb on + strand, within Pf1N1B4_718at 819.207 kb on + strand, within Pf1N1B4_718at 819.207 kb on + strand, within Pf1N1B4_718at 819.207 kb on + strand, within Pf1N1B4_718at 819.207 kb on + strand, within Pf1N1B4_718at 819.207 kb on + strand, within Pf1N1B4_718at 819.208 kb on - strand, within Pf1N1B4_718at 819.208 kb on - strand, within Pf1N1B4_718at 819.208 kb on - strand, within Pf1N1B4_718at 819.208 kb on - strand, within Pf1N1B4_718at 819.386 kb on + strand, within Pf1N1B4_718at 819.604 kb on + strand, within Pf1N1B4_718at 819.604 kb on + strand, within Pf1N1B4_718at 819.605 kb on - strand, within Pf1N1B4_718at 819.678 kb on + strand, within Pf1N1B4_718at 819.679 kb on - strand, within Pf1N1B4_718at 819.679 kb on - strand, within Pf1N1B4_718at 819.704 kb on + strand, within Pf1N1B4_718at 819.705 kb on - strand, within Pf1N1B4_718at 819.794 kb on - strandat 819.796 kb on + strandat 819.797 kb on - strandat 819.797 kb on - strandat 819.797 kb on - strandat 819.839 kb on + strandat 819.881 kb on - strandat 819.907 kb on - strandat 819.954 kb on - strandat 819.972 kb on + strandat 819.972 kb on + strandat 819.973 kb on - strandat 820.032 kb on + strandat 820.032 kb on + strandat 820.033 kb on - strandat 820.061 kb on + strandat 820.061 kb on + strandat 820.107 kb on + strandat 820.107 kb on + strandat 820.107 kb on + strandat 820.107 kb on + strandat 820.107 kb on + strandat 820.108 kb on - strandat 820.108 kb on - strandat 820.108 kb on - strandat 820.108 kb on - strandat 820.108 kb on - strandat 820.151 kb on + strandat 820.174 kb on + strandat 820.192 kb on + strandat 820.192 kb on + strandat 820.192 kb on + strandat 820.192 kb on + strandat 820.192 kb on + strandat 820.192 kb on + strandat 820.193 kb on - strandat 820.193 kb on - strandat 820.193 kb on - strandat 820.232 kb on + strand, within Pf1N1B4_719at 820.233 kb on - strand, within Pf1N1B4_719at 820.233 kb on - strand, within Pf1N1B4_719at 820.475 kb on - strand, within Pf1N1B4_719at 820.657 kb on + strand, within Pf1N1B4_719at 820.658 kb on - strand, within Pf1N1B4_719at 820.708 kb on + strand, within Pf1N1B4_719at 820.709 kb on - strand, within Pf1N1B4_719at 820.709 kb on - strand, within Pf1N1B4_719at 820.767 kb on - strand, within Pf1N1B4_719at 820.813 kb on - strand, within Pf1N1B4_719

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml
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817,823 + Pf1N1B4_717 0.11 -1.2
817,824 - Pf1N1B4_717 0.11 -1.2
818,101 - Pf1N1B4_717 0.37 -2.2
818,129 + Pf1N1B4_717 0.40 -0.3
818,129 + Pf1N1B4_717 0.40 -2.3
818,129 + -0.6
818,129 + Pf1N1B4_717 0.40 -1.3
818,129 + Pf1N1B4_717 0.40 -1.3
818,129 + +1.0
818,129 + Pf1N1B4_717 0.40 -0.6
818,129 + Pf1N1B4_717 0.40 -2.3
818,129 + Pf1N1B4_717 0.40 -0.0
818,129 + Pf1N1B4_717 0.40 -2.6
818,130 - Pf1N1B4_717 0.40 -0.0
818,130 - Pf1N1B4_717 0.40 -0.3
818,130 - Pf1N1B4_717 0.40 -1.6
818,130 - Pf1N1B4_717 0.40 -2.2
818,130 - Pf1N1B4_717 0.40 +0.2
818,130 - Pf1N1B4_717 0.40 -0.4
818,130 - Pf1N1B4_717 0.40 -1.6
818,130 - Pf1N1B4_717 0.40 -1.1
818,183 + Pf1N1B4_717 0.45 -0.7
818,183 + Pf1N1B4_717 0.45 -0.8
818,183 + Pf1N1B4_717 0.45 -2.0
818,183 + Pf1N1B4_717 0.45 -2.9
818,184 - Pf1N1B4_717 0.45 -1.8
818,184 - Pf1N1B4_717 0.45 -0.6
818,184 - Pf1N1B4_717 0.45 +1.0
818,580 - Pf1N1B4_717 0.82 -0.9
818,672 + -0.8
818,672 + -1.0
818,672 + +0.4
818,672 + -1.0
818,918 - Pf1N1B4_718 0.12 -2.0
819,011 + Pf1N1B4_718 0.21 -0.0
819,050 - Pf1N1B4_718 0.24 -2.3
819,115 + Pf1N1B4_718 0.30 -1.7
819,115 + Pf1N1B4_718 0.30 +0.5
819,154 + Pf1N1B4_718 0.34 -2.2
819,155 - Pf1N1B4_718 0.34 -0.3
819,205 + Pf1N1B4_718 0.38 -3.0
819,205 + Pf1N1B4_718 0.38 -0.7
819,206 - Pf1N1B4_718 0.39 -2.2
819,206 - Pf1N1B4_718 0.39 -2.2
819,207 + Pf1N1B4_718 0.39 -2.0
819,207 + Pf1N1B4_718 0.39 -2.2
819,207 + Pf1N1B4_718 0.39 -1.7
819,207 + Pf1N1B4_718 0.39 -0.3
819,207 + Pf1N1B4_718 0.39 +0.4
819,207 + Pf1N1B4_718 0.39 -0.8
819,207 + Pf1N1B4_718 0.39 -2.2
819,208 - Pf1N1B4_718 0.39 -2.7
819,208 - Pf1N1B4_718 0.39 -1.3
819,208 - Pf1N1B4_718 0.39 +0.2
819,208 - Pf1N1B4_718 0.39 -2.2
819,386 + Pf1N1B4_718 0.55 -0.6
819,604 + Pf1N1B4_718 0.75 -0.2
819,604 + Pf1N1B4_718 0.75 -0.6
819,605 - Pf1N1B4_718 0.75 -2.0
819,678 + Pf1N1B4_718 0.81 -1.8
819,679 - Pf1N1B4_718 0.81 -1.7
819,679 - Pf1N1B4_718 0.81 -2.7
819,704 + Pf1N1B4_718 0.84 -1.6
819,705 - Pf1N1B4_718 0.84 -0.0
819,794 - -2.9
819,796 + -1.0
819,797 - +1.0
819,797 - -0.0
819,797 - +0.5
819,839 + +0.7
819,881 - +2.0
819,907 - +0.5
819,954 - -1.0
819,972 + +1.4
819,972 + +0.4
819,973 - +1.0
820,032 + -0.6
820,032 + -0.4
820,033 - +1.0
820,061 + -1.0
820,061 + -0.3
820,107 + +0.1
820,107 + +0.7
820,107 + +2.3
820,107 + +1.0
820,107 + +0.1
820,108 - -0.6
820,108 - -0.4
820,108 - +0.1
820,108 - -0.6
820,108 - -0.8
820,151 + +2.6
820,174 + -0.6
820,192 + +1.4
820,192 + -0.7
820,192 + -2.5
820,192 + -1.6
820,192 + +1.0
820,192 + -0.6
820,193 - -1.3
820,193 - -1.2
820,193 - -1.0
820,232 + Pf1N1B4_719 0.11 +1.7
820,233 - Pf1N1B4_719 0.11 +0.3
820,233 - Pf1N1B4_719 0.11 -1.2
820,475 - Pf1N1B4_719 0.32 -0.5
820,657 + Pf1N1B4_719 0.48 -1.1
820,658 - Pf1N1B4_719 0.48 +0.2
820,708 + Pf1N1B4_719 0.52 -1.0
820,709 - Pf1N1B4_719 0.52 -2.5
820,709 - Pf1N1B4_719 0.52 +0.3
820,767 - Pf1N1B4_719 0.57 -0.0
820,813 - Pf1N1B4_719 0.61 +2.6

Or see this region's nucleotide sequence