Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_717

Experiment: Rifampicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_716 and Pf1N1B4_717 are separated by 27 nucleotidesPf1N1B4_717 and Pf1N1B4_718 are separated by 14 nucleotides Pf1N1B4_716 - Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites, at 816,248 to 817,675 _716 Pf1N1B4_717 - Iron-regulated protein A precursor, at 817,703 to 818,767 _717 Pf1N1B4_718 - outer membrane component of uptake system, probably for ferrous iron (from data), at 818,782 to 819,882 _718 Position (kb) 817 818 819Strain fitness (log2 ratio) -3 -2 -1 0 1at 816.740 kb on - strand, within Pf1N1B4_716at 817.093 kb on + strand, within Pf1N1B4_716at 817.229 kb on + strand, within Pf1N1B4_716at 817.229 kb on + strand, within Pf1N1B4_716at 817.229 kb on + strand, within Pf1N1B4_716at 817.231 kb on + strand, within Pf1N1B4_716at 817.398 kb on - strand, within Pf1N1B4_716at 817.673 kb on + strandat 817.676 kb on + strandat 817.677 kb on - strandat 817.823 kb on + strand, within Pf1N1B4_717at 817.824 kb on - strand, within Pf1N1B4_717at 818.101 kb on - strand, within Pf1N1B4_717at 818.129 kb on + strand, within Pf1N1B4_717at 818.129 kb on + strand, within Pf1N1B4_717at 818.129 kb on + strandat 818.129 kb on + strand, within Pf1N1B4_717at 818.129 kb on + strand, within Pf1N1B4_717at 818.129 kb on + strandat 818.129 kb on + strand, within Pf1N1B4_717at 818.129 kb on + strand, within Pf1N1B4_717at 818.129 kb on + strand, within Pf1N1B4_717at 818.129 kb on + strand, within Pf1N1B4_717at 818.130 kb on - strand, within Pf1N1B4_717at 818.130 kb on - strand, within Pf1N1B4_717at 818.130 kb on - strand, within Pf1N1B4_717at 818.130 kb on - strand, within Pf1N1B4_717at 818.130 kb on - strand, within Pf1N1B4_717at 818.130 kb on - strand, within Pf1N1B4_717at 818.130 kb on - strand, within Pf1N1B4_717at 818.130 kb on - strand, within Pf1N1B4_717at 818.183 kb on + strand, within Pf1N1B4_717at 818.183 kb on + strand, within Pf1N1B4_717at 818.183 kb on + strand, within Pf1N1B4_717at 818.183 kb on + strand, within Pf1N1B4_717at 818.184 kb on - strand, within Pf1N1B4_717at 818.184 kb on - strand, within Pf1N1B4_717at 818.184 kb on - strand, within Pf1N1B4_717at 818.580 kb on - strand, within Pf1N1B4_717at 818.672 kb on + strandat 818.672 kb on + strandat 818.672 kb on + strandat 818.672 kb on + strandat 818.918 kb on - strand, within Pf1N1B4_718at 819.011 kb on + strand, within Pf1N1B4_718at 819.050 kb on - strand, within Pf1N1B4_718at 819.115 kb on + strand, within Pf1N1B4_718at 819.115 kb on + strand, within Pf1N1B4_718at 819.154 kb on + strand, within Pf1N1B4_718at 819.155 kb on - strand, within Pf1N1B4_718at 819.205 kb on + strand, within Pf1N1B4_718at 819.205 kb on + strand, within Pf1N1B4_718at 819.206 kb on - strand, within Pf1N1B4_718at 819.206 kb on - strand, within Pf1N1B4_718at 819.207 kb on + strand, within Pf1N1B4_718at 819.207 kb on + strand, within Pf1N1B4_718at 819.207 kb on + strand, within Pf1N1B4_718at 819.207 kb on + strand, within Pf1N1B4_718at 819.207 kb on + strand, within Pf1N1B4_718at 819.207 kb on + strand, within Pf1N1B4_718at 819.207 kb on + strand, within Pf1N1B4_718at 819.208 kb on - strand, within Pf1N1B4_718at 819.208 kb on - strand, within Pf1N1B4_718at 819.208 kb on - strand, within Pf1N1B4_718at 819.208 kb on - strand, within Pf1N1B4_718at 819.386 kb on + strand, within Pf1N1B4_718at 819.604 kb on + strand, within Pf1N1B4_718at 819.604 kb on + strand, within Pf1N1B4_718at 819.605 kb on - strand, within Pf1N1B4_718at 819.678 kb on + strand, within Pf1N1B4_718at 819.679 kb on - strand, within Pf1N1B4_718at 819.679 kb on - strand, within Pf1N1B4_718at 819.704 kb on + strand, within Pf1N1B4_718at 819.705 kb on - strand, within Pf1N1B4_718

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml
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816,740 - Pf1N1B4_716 0.34 -0.4
817,093 + Pf1N1B4_716 0.59 -0.8
817,229 + Pf1N1B4_716 0.69 -2.2
817,229 + Pf1N1B4_716 0.69 +0.4
817,229 + Pf1N1B4_716 0.69 -0.1
817,231 + Pf1N1B4_716 0.69 -1.3
817,398 - Pf1N1B4_716 0.81 +1.0
817,673 + -0.0
817,676 + +0.4
817,677 - -1.3
817,823 + Pf1N1B4_717 0.11 -1.2
817,824 - Pf1N1B4_717 0.11 -1.2
818,101 - Pf1N1B4_717 0.37 -2.2
818,129 + Pf1N1B4_717 0.40 -0.3
818,129 + Pf1N1B4_717 0.40 -2.3
818,129 + -0.6
818,129 + Pf1N1B4_717 0.40 -1.3
818,129 + Pf1N1B4_717 0.40 -1.3
818,129 + +1.0
818,129 + Pf1N1B4_717 0.40 -0.6
818,129 + Pf1N1B4_717 0.40 -2.3
818,129 + Pf1N1B4_717 0.40 -0.0
818,129 + Pf1N1B4_717 0.40 -2.6
818,130 - Pf1N1B4_717 0.40 -0.0
818,130 - Pf1N1B4_717 0.40 -0.3
818,130 - Pf1N1B4_717 0.40 -1.6
818,130 - Pf1N1B4_717 0.40 -2.2
818,130 - Pf1N1B4_717 0.40 +0.2
818,130 - Pf1N1B4_717 0.40 -0.4
818,130 - Pf1N1B4_717 0.40 -1.6
818,130 - Pf1N1B4_717 0.40 -1.1
818,183 + Pf1N1B4_717 0.45 -0.7
818,183 + Pf1N1B4_717 0.45 -0.8
818,183 + Pf1N1B4_717 0.45 -2.0
818,183 + Pf1N1B4_717 0.45 -2.9
818,184 - Pf1N1B4_717 0.45 -1.8
818,184 - Pf1N1B4_717 0.45 -0.6
818,184 - Pf1N1B4_717 0.45 +1.0
818,580 - Pf1N1B4_717 0.82 -0.9
818,672 + -0.8
818,672 + -1.0
818,672 + +0.4
818,672 + -1.0
818,918 - Pf1N1B4_718 0.12 -2.0
819,011 + Pf1N1B4_718 0.21 -0.0
819,050 - Pf1N1B4_718 0.24 -2.3
819,115 + Pf1N1B4_718 0.30 -1.7
819,115 + Pf1N1B4_718 0.30 +0.5
819,154 + Pf1N1B4_718 0.34 -2.2
819,155 - Pf1N1B4_718 0.34 -0.3
819,205 + Pf1N1B4_718 0.38 -3.0
819,205 + Pf1N1B4_718 0.38 -0.7
819,206 - Pf1N1B4_718 0.39 -2.2
819,206 - Pf1N1B4_718 0.39 -2.2
819,207 + Pf1N1B4_718 0.39 -2.0
819,207 + Pf1N1B4_718 0.39 -2.2
819,207 + Pf1N1B4_718 0.39 -1.7
819,207 + Pf1N1B4_718 0.39 -0.3
819,207 + Pf1N1B4_718 0.39 +0.4
819,207 + Pf1N1B4_718 0.39 -0.8
819,207 + Pf1N1B4_718 0.39 -2.2
819,208 - Pf1N1B4_718 0.39 -2.7
819,208 - Pf1N1B4_718 0.39 -1.3
819,208 - Pf1N1B4_718 0.39 +0.2
819,208 - Pf1N1B4_718 0.39 -2.2
819,386 + Pf1N1B4_718 0.55 -0.6
819,604 + Pf1N1B4_718 0.75 -0.2
819,604 + Pf1N1B4_718 0.75 -0.6
819,605 - Pf1N1B4_718 0.75 -2.0
819,678 + Pf1N1B4_718 0.81 -1.8
819,679 - Pf1N1B4_718 0.81 -1.7
819,679 - Pf1N1B4_718 0.81 -2.7
819,704 + Pf1N1B4_718 0.84 -1.6
819,705 - Pf1N1B4_718 0.84 -0.0

Or see this region's nucleotide sequence