Experiment: Rifampicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_675 and Pf1N1B4_676 are separated by 146 nucleotides Pf1N1B4_676 and Pf1N1B4_677 are separated by 222 nucleotides Pf1N1B4_677 and Pf1N1B4_678 are separated by 257 nucleotides
Pf1N1B4_675 - hypothetical protein, at 773,129 to 773,347
_675
Pf1N1B4_676 - FIG00953991: hypothetical protein, at 773,494 to 773,853
_676
Pf1N1B4_677 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 774,076 to 774,390
_677
Pf1N1B4_678 - Pyruvate kinase (EC 2.7.1.40), at 774,648 to 776,099
_678
Position (kb) 774
775 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 773.086 kb on + strand at 773.187 kb on - strand, within Pf1N1B4_675 at 773.187 kb on - strand, within Pf1N1B4_675 at 773.187 kb on - strand, within Pf1N1B4_675 at 773.274 kb on - strand, within Pf1N1B4_675 at 773.274 kb on - strand, within Pf1N1B4_675 at 773.274 kb on - strand, within Pf1N1B4_675 at 773.345 kb on + strand at 773.346 kb on - strand at 773.352 kb on + strand at 773.352 kb on + strand at 773.353 kb on - strand at 773.357 kb on - strand at 773.357 kb on - strand at 773.357 kb on - strand at 773.425 kb on + strand at 773.425 kb on + strand at 773.426 kb on - strand at 773.426 kb on - strand at 773.426 kb on - strand at 773.426 kb on - strand at 773.426 kb on - strand at 773.474 kb on + strand at 773.475 kb on - strand at 773.528 kb on + strand at 773.529 kb on - strand at 773.529 kb on - strand at 773.597 kb on + strand, within Pf1N1B4_676 at 773.597 kb on + strand, within Pf1N1B4_676 at 773.597 kb on + strand, within Pf1N1B4_676 at 773.598 kb on - strand, within Pf1N1B4_676 at 773.598 kb on - strand, within Pf1N1B4_676 at 773.598 kb on - strand, within Pf1N1B4_676 at 773.698 kb on - strand, within Pf1N1B4_676 at 773.761 kb on - strand, within Pf1N1B4_676 at 773.813 kb on + strand, within Pf1N1B4_676 at 773.896 kb on + strand at 773.897 kb on - strand at 773.918 kb on - strand at 773.918 kb on - strand at 773.925 kb on + strand at 773.925 kb on + strand at 773.925 kb on + strand at 773.925 kb on + strand at 773.926 kb on - strand at 773.926 kb on - strand at 773.928 kb on - strand at 773.928 kb on - strand at 773.928 kb on - strand at 773.928 kb on - strand at 773.986 kb on + strand at 774.008 kb on + strand at 774.009 kb on - strand at 774.018 kb on + strand at 774.019 kb on - strand at 774.050 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.207 kb on - strand, within Pf1N1B4_677 at 774.207 kb on - strand, within Pf1N1B4_677 at 774.207 kb on - strand, within Pf1N1B4_677 at 774.226 kb on - strand, within Pf1N1B4_677 at 774.284 kb on + strand, within Pf1N1B4_677 at 774.284 kb on + strand, within Pf1N1B4_677 at 774.284 kb on + strand, within Pf1N1B4_677 at 774.284 kb on + strand, within Pf1N1B4_677 at 774.284 kb on + strand, within Pf1N1B4_677 at 774.284 kb on + strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677 at 774.365 kb on + strand at 774.365 kb on + strand at 774.365 kb on + strand at 774.366 kb on - strand at 774.366 kb on - strand at 774.366 kb on - strand at 774.486 kb on - strand at 774.549 kb on + strand at 774.549 kb on + strand at 774.549 kb on + strand at 774.550 kb on - strand at 774.550 kb on - strand at 774.550 kb on - strand at 774.550 kb on - strand at 774.550 kb on - strand at 774.550 kb on - strand at 774.550 kb on - strand at 774.575 kb on - strand at 774.575 kb on - strand at 774.594 kb on + strand at 774.595 kb on - strand at 774.600 kb on + strand at 774.600 kb on + strand at 774.600 kb on + strand at 774.601 kb on - strand at 774.601 kb on - strand at 774.601 kb on - strand at 774.609 kb on + strand at 774.609 kb on + strand at 774.610 kb on - strand at 774.610 kb on - strand at 774.610 kb on - strand at 774.610 kb on - strand at 774.610 kb on - strand at 774.610 kb on - strand at 774.612 kb on + strand at 774.612 kb on + strand at 774.612 kb on + strand at 774.613 kb on - strand at 774.613 kb on - strand at 774.613 kb on - strand at 774.613 kb on - strand at 774.613 kb on - strand at 774.613 kb on - strand at 774.643 kb on + strand at 774.643 kb on + strand at 774.643 kb on + strand at 774.643 kb on + strand at 774.643 kb on + strand at 774.644 kb on - strand at 774.644 kb on - strand at 774.644 kb on - strand at 774.644 kb on - strand at 774.644 kb on - strand at 774.644 kb on - strand at 774.644 kb on - strand at 774.678 kb on - strand at 774.695 kb on + strand at 774.696 kb on - strand at 774.696 kb on - strand at 774.696 kb on - strand at 774.932 kb on + strand, within Pf1N1B4_678 at 774.932 kb on + strand, within Pf1N1B4_678 at 774.932 kb on + strand, within Pf1N1B4_678 at 774.933 kb on - strand, within Pf1N1B4_678 at 775.046 kb on + strand, within Pf1N1B4_678 at 775.058 kb on + strand, within Pf1N1B4_678 at 775.215 kb on + strand, within Pf1N1B4_678 at 775.216 kb on - strand, within Pf1N1B4_678 at 775.216 kb on - strand, within Pf1N1B4_678 at 775.257 kb on + strand, within Pf1N1B4_678 at 775.257 kb on + strand, within Pf1N1B4_678
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml remove 773,086 + -1.0 773,187 - Pf1N1B4_675 0.26 +0.8 773,187 - Pf1N1B4_675 0.26 -0.7 773,187 - Pf1N1B4_675 0.26 -0.7 773,274 - Pf1N1B4_675 0.66 -1.6 773,274 - Pf1N1B4_675 0.66 -1.0 773,274 - Pf1N1B4_675 0.66 +1.0 773,345 + -0.1 773,346 - -0.6 773,352 + -1.4 773,352 + +2.0 773,353 - -1.0 773,357 - -0.6 773,357 - +1.0 773,357 - +0.1 773,425 + -2.0 773,425 + +1.4 773,426 - +0.6 773,426 - +2.0 773,426 - +0.6 773,426 - +0.2 773,426 - -0.9 773,474 + +1.5 773,475 - -0.8 773,528 + -2.6 773,529 - -2.2 773,529 - +0.9 773,597 + Pf1N1B4_676 0.29 +2.3 773,597 + Pf1N1B4_676 0.29 +0.3 773,597 + Pf1N1B4_676 0.29 -0.4 773,598 - Pf1N1B4_676 0.29 -0.2 773,598 - Pf1N1B4_676 0.29 +0.5 773,598 - Pf1N1B4_676 0.29 -0.8 773,698 - Pf1N1B4_676 0.57 +1.4 773,761 - Pf1N1B4_676 0.74 -1.1 773,813 + Pf1N1B4_676 0.89 -0.2 773,896 + +0.9 773,897 - +0.6 773,918 - +0.4 773,918 - -1.3 773,925 + -0.4 773,925 + +2.9 773,925 + -0.2 773,925 + -1.1 773,926 - -0.1 773,926 - +0.4 773,928 - -2.2 773,928 - -2.1 773,928 - -1.6 773,928 - -0.1 773,986 + +1.0 774,008 + +3.0 774,009 - +0.2 774,018 + +0.1 774,019 - +0.7 774,050 + +0.5 774,052 + +0.2 774,052 + -0.6 774,052 + -0.2 774,052 + -2.0 774,052 + +0.4 774,052 + -2.0 774,052 + +0.5 774,052 + -0.5 774,052 + -0.6 774,052 + -1.0 774,052 + +0.3 774,053 - -2.1 774,053 - -1.4 774,053 - -0.6 774,053 - +1.6 774,053 - -0.4 774,053 - -0.3 774,053 - +0.4 774,053 - +0.5 774,053 - -0.2 774,053 - +0.7 774,207 - Pf1N1B4_677 0.42 +0.4 774,207 - Pf1N1B4_677 0.42 +0.1 774,207 - Pf1N1B4_677 0.42 -0.2 774,226 - Pf1N1B4_677 0.48 +1.5 774,284 + Pf1N1B4_677 0.66 -0.3 774,284 + Pf1N1B4_677 0.66 -1.0 774,284 + Pf1N1B4_677 0.66 -1.0 774,284 + Pf1N1B4_677 0.66 -1.2 774,284 + Pf1N1B4_677 0.66 +0.5 774,284 + Pf1N1B4_677 0.66 +3.7 774,285 - Pf1N1B4_677 0.66 -2.0 774,285 - Pf1N1B4_677 0.66 -2.0 774,285 - Pf1N1B4_677 0.66 +0.2 774,285 - Pf1N1B4_677 0.66 -0.0 774,285 - Pf1N1B4_677 0.66 +1.0 774,285 - Pf1N1B4_677 0.66 -1.6 774,285 - Pf1N1B4_677 0.66 -1.4 774,285 - Pf1N1B4_677 0.66 -1.0 774,365 + -1.6 774,365 + -0.5 774,365 + -0.6 774,366 - -0.9 774,366 - +2.3 774,366 - +1.0 774,486 - +1.4 774,549 + +0.8 774,549 + -0.4 774,549 + +1.0 774,550 - +0.1 774,550 - -0.6 774,550 - -0.0 774,550 - +2.1 774,550 - -1.0 774,550 - +1.0 774,550 - -0.4 774,575 - -0.0 774,575 - -2.4 774,594 + +0.4 774,595 - -0.6 774,600 + +0.7 774,600 + +2.0 774,600 + -0.7 774,601 - +0.7 774,601 - +0.3 774,601 - -2.6 774,609 + -0.5 774,609 + +1.7 774,610 - -1.4 774,610 - +1.0 774,610 - -0.6 774,610 - +0.1 774,610 - +0.2 774,610 - -0.4 774,612 + -0.2 774,612 + -2.4 774,612 + +0.1 774,613 - -0.0 774,613 - +0.5 774,613 - +0.7 774,613 - +0.7 774,613 - +2.0 774,613 - -0.0 774,643 + +0.4 774,643 + +1.5 774,643 + -0.9 774,643 + +1.2 774,643 + -0.0 774,644 - +0.6 774,644 - -0.6 774,644 - -0.4 774,644 - -2.2 774,644 - -0.6 774,644 - +0.6 774,644 - +0.5 774,678 - +1.6 774,695 + -0.3 774,696 - +0.7 774,696 - -0.6 774,696 - +0.4 774,932 + Pf1N1B4_678 0.20 -0.0 774,932 + Pf1N1B4_678 0.20 +0.4 774,932 + Pf1N1B4_678 0.20 +0.5 774,933 - Pf1N1B4_678 0.20 +1.4 775,046 + Pf1N1B4_678 0.27 +0.5 775,058 + Pf1N1B4_678 0.28 +1.4 775,215 + Pf1N1B4_678 0.39 -1.6 775,216 - Pf1N1B4_678 0.39 +1.5 775,216 - Pf1N1B4_678 0.39 +2.0 775,257 + Pf1N1B4_678 0.42 +0.7 775,257 + Pf1N1B4_678 0.42 -0.6
Or see this region's nucleotide sequence