Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_650

Experiment: Rifampicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_649 and Pf1N1B4_650 are separated by 200 nucleotidesPf1N1B4_650 and Pf1N1B4_651 are separated by 139 nucleotides Pf1N1B4_649 - Small-conductance mechanosensitive channel, at 743,011 to 743,853 _649 Pf1N1B4_650 - FIG001943: hypothetical protein YajQ, at 744,054 to 744,539 _650 Pf1N1B4_651 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 744,679 to 745,596 _651 Position (kb) 744 745Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 743.064 kb on + strandat 743.221 kb on + strand, within Pf1N1B4_649at 743.222 kb on - strand, within Pf1N1B4_649at 743.249 kb on - strand, within Pf1N1B4_649at 743.282 kb on + strandat 743.282 kb on + strand, within Pf1N1B4_649at 743.341 kb on - strand, within Pf1N1B4_649at 743.385 kb on + strand, within Pf1N1B4_649at 743.424 kb on + strandat 743.425 kb on - strand, within Pf1N1B4_649at 743.425 kb on - strand, within Pf1N1B4_649at 743.425 kb on - strand, within Pf1N1B4_649at 743.770 kb on + strandat 743.771 kb on - strandat 743.784 kb on - strandat 743.919 kb on + strandat 744.004 kb on + strandat 744.116 kb on + strand, within Pf1N1B4_650at 744.116 kb on + strand, within Pf1N1B4_650at 744.116 kb on + strand, within Pf1N1B4_650at 744.116 kb on + strand, within Pf1N1B4_650at 744.116 kb on + strand, within Pf1N1B4_650at 744.116 kb on + strand, within Pf1N1B4_650at 744.117 kb on - strand, within Pf1N1B4_650at 744.117 kb on - strand, within Pf1N1B4_650at 744.117 kb on - strand, within Pf1N1B4_650at 744.117 kb on - strandat 744.117 kb on - strand, within Pf1N1B4_650at 744.117 kb on - strand, within Pf1N1B4_650at 744.117 kb on - strand, within Pf1N1B4_650at 744.117 kb on - strandat 744.289 kb on + strand, within Pf1N1B4_650at 744.452 kb on - strand, within Pf1N1B4_650at 744.541 kb on + strandat 744.541 kb on + strandat 744.541 kb on + strandat 744.541 kb on + strandat 744.541 kb on + strandat 744.541 kb on + strandat 744.542 kb on - strandat 744.542 kb on - strandat 744.542 kb on - strandat 744.542 kb on - strandat 744.542 kb on - strandat 744.542 kb on - strandat 744.542 kb on - strandat 744.554 kb on - strandat 744.554 kb on - strandat 744.598 kb on - strandat 744.612 kb on + strandat 744.612 kb on + strandat 744.612 kb on + strandat 744.613 kb on - strandat 744.613 kb on - strandat 744.613 kb on - strandat 744.613 kb on - strandat 744.613 kb on - strandat 744.613 kb on - strandat 744.613 kb on - strandat 744.613 kb on - strandat 744.613 kb on - strandat 744.615 kb on - strandat 744.615 kb on - strandat 744.615 kb on - strandat 744.615 kb on - strandat 744.696 kb on + strandat 744.696 kb on + strandat 744.697 kb on - strandat 744.697 kb on - strandat 744.697 kb on - strandat 744.697 kb on - strandat 744.697 kb on - strandat 744.697 kb on - strandat 744.697 kb on - strandat 744.791 kb on + strand, within Pf1N1B4_651at 744.792 kb on - strand, within Pf1N1B4_651at 744.792 kb on - strand, within Pf1N1B4_651at 744.792 kb on - strandat 744.850 kb on + strand, within Pf1N1B4_651at 744.850 kb on + strand, within Pf1N1B4_651at 744.903 kb on - strand, within Pf1N1B4_651at 744.903 kb on - strand, within Pf1N1B4_651at 744.919 kb on + strand, within Pf1N1B4_651at 744.919 kb on + strand, within Pf1N1B4_651at 745.114 kb on + strand, within Pf1N1B4_651at 745.115 kb on - strand, within Pf1N1B4_651at 745.182 kb on + strand, within Pf1N1B4_651at 745.438 kb on + strand, within Pf1N1B4_651at 745.438 kb on + strand, within Pf1N1B4_651at 745.438 kb on + strand, within Pf1N1B4_651at 745.438 kb on + strand, within Pf1N1B4_651at 745.439 kb on - strand, within Pf1N1B4_651at 745.439 kb on - strand, within Pf1N1B4_651at 745.477 kb on + strand, within Pf1N1B4_651at 745.478 kb on - strand, within Pf1N1B4_651at 745.478 kb on - strand, within Pf1N1B4_651at 745.478 kb on - strand, within Pf1N1B4_651at 745.478 kb on - strand, within Pf1N1B4_651at 745.490 kb on - strand, within Pf1N1B4_651

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml
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743,064 + -2.2
743,221 + Pf1N1B4_649 0.25 +1.1
743,222 - Pf1N1B4_649 0.25 -0.6
743,249 - Pf1N1B4_649 0.28 +1.5
743,282 + +2.5
743,282 + Pf1N1B4_649 0.32 +1.7
743,341 - Pf1N1B4_649 0.39 +1.5
743,385 + Pf1N1B4_649 0.44 -0.1
743,424 + -0.6
743,425 - Pf1N1B4_649 0.49 +2.3
743,425 - Pf1N1B4_649 0.49 +1.2
743,425 - Pf1N1B4_649 0.49 +0.1
743,770 + -1.6
743,771 - -0.8
743,784 - +0.9
743,919 + -0.1
744,004 + +0.2
744,116 + Pf1N1B4_650 0.13 -1.1
744,116 + Pf1N1B4_650 0.13 -0.8
744,116 + Pf1N1B4_650 0.13 -0.9
744,116 + Pf1N1B4_650 0.13 -2.9
744,116 + Pf1N1B4_650 0.13 -1.6
744,116 + Pf1N1B4_650 0.13 -2.4
744,117 - Pf1N1B4_650 0.13 -2.4
744,117 - Pf1N1B4_650 0.13 +0.2
744,117 - Pf1N1B4_650 0.13 -1.5
744,117 - -0.6
744,117 - Pf1N1B4_650 0.13 -1.1
744,117 - Pf1N1B4_650 0.13 -0.2
744,117 - Pf1N1B4_650 0.13 -1.6
744,117 - -0.6
744,289 + Pf1N1B4_650 0.48 -1.9
744,452 - Pf1N1B4_650 0.82 +0.9
744,541 + -0.1
744,541 + +0.6
744,541 + -0.1
744,541 + -0.6
744,541 + +1.5
744,541 + -1.4
744,542 - -1.9
744,542 - -2.1
744,542 - -0.6
744,542 - +0.1
744,542 - -1.4
744,542 - -1.6
744,542 - -0.5
744,554 - +0.9
744,554 - +1.9
744,598 - -0.8
744,612 + -1.4
744,612 + -0.8
744,612 + +0.4
744,613 - +0.3
744,613 - +0.4
744,613 - +1.2
744,613 - +0.9
744,613 - -0.1
744,613 - -1.6
744,613 - -1.4
744,613 - -0.4
744,613 - -0.3
744,615 - -0.1
744,615 - +0.4
744,615 - -0.4
744,615 - +0.4
744,696 + -0.3
744,696 + -0.2
744,697 - -2.6
744,697 - +0.9
744,697 - +0.5
744,697 - +0.3
744,697 - +0.9
744,697 - -0.5
744,697 - +1.4
744,791 + Pf1N1B4_651 0.12 +0.4
744,792 - Pf1N1B4_651 0.12 +0.4
744,792 - Pf1N1B4_651 0.12 -1.6
744,792 - -0.6
744,850 + Pf1N1B4_651 0.19 -1.6
744,850 + Pf1N1B4_651 0.19 +1.7
744,903 - Pf1N1B4_651 0.24 -0.9
744,903 - Pf1N1B4_651 0.24 -0.1
744,919 + Pf1N1B4_651 0.26 -1.6
744,919 + Pf1N1B4_651 0.26 +1.2
745,114 + Pf1N1B4_651 0.47 +0.3
745,115 - Pf1N1B4_651 0.47 -3.4
745,182 + Pf1N1B4_651 0.55 +2.5
745,438 + Pf1N1B4_651 0.83 -0.1
745,438 + Pf1N1B4_651 0.83 +0.7
745,438 + Pf1N1B4_651 0.83 +0.8
745,438 + Pf1N1B4_651 0.83 -0.3
745,439 - Pf1N1B4_651 0.83 +1.4
745,439 - Pf1N1B4_651 0.83 +1.5
745,477 + Pf1N1B4_651 0.87 +0.7
745,478 - Pf1N1B4_651 0.87 +0.2
745,478 - Pf1N1B4_651 0.87 -1.6
745,478 - Pf1N1B4_651 0.87 +1.8
745,478 - Pf1N1B4_651 0.87 -0.9
745,490 - Pf1N1B4_651 0.88 +0.4

Or see this region's nucleotide sequence