Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5871

Experiment: Rifampicin 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_5870 and Pf1N1B4_5871 are separated by 37 nucleotidesPf1N1B4_5871 and Pf1N1B4_5872 overlap by 4 nucleotides Pf1N1B4_5870 - VgrG protein, at 303,515 to 305,557 _5870 Pf1N1B4_5871 - FIG00963848: hypothetical protein, at 305,595 to 306,290 _5871 Pf1N1B4_5872 - Rhs family protein, at 306,287 to 311,062 _5872 Position (kb) 305 306 307Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 304.878 kb on - strand, within Pf1N1B4_5870at 304.878 kb on - strand, within Pf1N1B4_5870at 305.108 kb on + strand, within Pf1N1B4_5870at 305.144 kb on + strand, within Pf1N1B4_5870at 305.485 kb on + strandat 305.485 kb on + strandat 305.489 kb on - strandat 305.930 kb on + strand, within Pf1N1B4_5871at 305.930 kb on + strand, within Pf1N1B4_5871at 305.930 kb on + strand, within Pf1N1B4_5871at 305.995 kb on - strand, within Pf1N1B4_5871at 306.002 kb on + strand, within Pf1N1B4_5871at 306.165 kb on + strand, within Pf1N1B4_5871at 306.165 kb on + strand, within Pf1N1B4_5871at 306.286 kb on + strandat 306.287 kb on - strandat 306.407 kb on + strandat 306.497 kb on + strandat 306.655 kb on - strandat 306.705 kb on - strandat 306.799 kb on - strand, within Pf1N1B4_5872at 306.844 kb on + strand, within Pf1N1B4_5872at 306.978 kb on - strand, within Pf1N1B4_5872at 306.978 kb on - strand, within Pf1N1B4_5872at 307.094 kb on + strand, within Pf1N1B4_5872at 307.094 kb on + strand, within Pf1N1B4_5872at 307.094 kb on + strand, within Pf1N1B4_5872at 307.248 kb on + strand, within Pf1N1B4_5872

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml
remove
304,878 - Pf1N1B4_5870 0.67 -1.2
304,878 - Pf1N1B4_5870 0.67 -0.6
305,108 + Pf1N1B4_5870 0.78 +0.8
305,144 + Pf1N1B4_5870 0.80 -1.6
305,485 + +0.6
305,485 + +1.8
305,489 - -1.6
305,930 + Pf1N1B4_5871 0.48 -0.2
305,930 + Pf1N1B4_5871 0.48 -0.4
305,930 + Pf1N1B4_5871 0.48 -1.2
305,995 - Pf1N1B4_5871 0.57 +0.4
306,002 + Pf1N1B4_5871 0.58 -2.6
306,165 + Pf1N1B4_5871 0.82 -1.6
306,165 + Pf1N1B4_5871 0.82 -3.4
306,286 + +0.0
306,287 - -1.2
306,407 + -0.6
306,497 + -2.0
306,655 - -1.2
306,705 - +1.4
306,799 - Pf1N1B4_5872 0.11 -1.0
306,844 + Pf1N1B4_5872 0.12 -1.6
306,978 - Pf1N1B4_5872 0.14 -0.1
306,978 - Pf1N1B4_5872 0.14 -1.2
307,094 + Pf1N1B4_5872 0.17 +0.2
307,094 + Pf1N1B4_5872 0.17 -2.5
307,094 + Pf1N1B4_5872 0.17 -0.2
307,248 + Pf1N1B4_5872 0.20 +0.8

Or see this region's nucleotide sequence