Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_578

Experiment: Rifampicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_577 and Pf1N1B4_578 are separated by 45 nucleotidesPf1N1B4_578 and Pf1N1B4_579 are separated by 83 nucleotidesPf1N1B4_579 and Pf1N1B4_580 are separated by 11 nucleotides Pf1N1B4_577 - Lysophospholipase (EC 3.1.1.5); Monoglyceride lipase (EC 3.1.1.23); putative, at 669,959 to 670,903 _577 Pf1N1B4_578 - enoyl-CoA hydratase, R-specific, at 670,949 to 671,419 _578 Pf1N1B4_579 - Membrane fusion component of tripartite multidrug resistance system, at 671,503 to 672,363 _579 Pf1N1B4_580 - FIG00953813: hypothetical protein, at 672,375 to 672,581 _580 Position (kb) 670 671 672Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 670.125 kb on - strand, within Pf1N1B4_577at 670.133 kb on + strand, within Pf1N1B4_577at 670.133 kb on + strand, within Pf1N1B4_577at 670.133 kb on + strand, within Pf1N1B4_577at 670.146 kb on + strand, within Pf1N1B4_577at 670.146 kb on + strand, within Pf1N1B4_577at 670.147 kb on - strandat 670.147 kb on - strand, within Pf1N1B4_577at 670.147 kb on - strand, within Pf1N1B4_577at 670.282 kb on - strand, within Pf1N1B4_577at 670.282 kb on - strand, within Pf1N1B4_577at 670.307 kb on + strand, within Pf1N1B4_577at 670.307 kb on + strand, within Pf1N1B4_577at 670.308 kb on - strand, within Pf1N1B4_577at 670.308 kb on - strand, within Pf1N1B4_577at 670.322 kb on + strand, within Pf1N1B4_577at 670.322 kb on + strand, within Pf1N1B4_577at 670.322 kb on + strand, within Pf1N1B4_577at 670.323 kb on - strandat 670.323 kb on - strand, within Pf1N1B4_577at 670.559 kb on + strand, within Pf1N1B4_577at 670.559 kb on + strand, within Pf1N1B4_577at 670.559 kb on + strand, within Pf1N1B4_577at 670.560 kb on - strand, within Pf1N1B4_577at 670.783 kb on + strand, within Pf1N1B4_577at 670.783 kb on + strand, within Pf1N1B4_577at 670.783 kb on + strand, within Pf1N1B4_577at 671.006 kb on + strand, within Pf1N1B4_578at 671.119 kb on + strand, within Pf1N1B4_578at 671.195 kb on + strand, within Pf1N1B4_578at 671.196 kb on - strand, within Pf1N1B4_578at 671.197 kb on + strand, within Pf1N1B4_578at 671.292 kb on + strandat 671.292 kb on + strand, within Pf1N1B4_578at 671.422 kb on + strandat 671.422 kb on + strandat 671.423 kb on - strandat 671.458 kb on + strandat 671.458 kb on + strandat 671.665 kb on - strand, within Pf1N1B4_579at 671.665 kb on - strand, within Pf1N1B4_579at 671.789 kb on + strand, within Pf1N1B4_579at 671.801 kb on + strand, within Pf1N1B4_579at 671.802 kb on - strand, within Pf1N1B4_579at 671.802 kb on - strand, within Pf1N1B4_579at 671.802 kb on - strand, within Pf1N1B4_579at 671.802 kb on - strand, within Pf1N1B4_579at 671.802 kb on - strandat 671.852 kb on + strand, within Pf1N1B4_579at 671.852 kb on + strand, within Pf1N1B4_579at 671.852 kb on + strand, within Pf1N1B4_579at 671.853 kb on - strand, within Pf1N1B4_579at 671.853 kb on - strand, within Pf1N1B4_579at 671.853 kb on - strand, within Pf1N1B4_579at 671.853 kb on - strand, within Pf1N1B4_579at 671.853 kb on - strand, within Pf1N1B4_579at 671.856 kb on + strand, within Pf1N1B4_579at 671.856 kb on + strand, within Pf1N1B4_579at 671.857 kb on - strand, within Pf1N1B4_579at 672.281 kb on + strandat 672.281 kb on + strandat 672.281 kb on + strandat 672.281 kb on + strandat 672.281 kb on + strandat 672.281 kb on + strandat 672.281 kb on + strandat 672.281 kb on + strandat 672.281 kb on + strandat 672.281 kb on + strandat 672.282 kb on - strandat 672.282 kb on - strandat 672.282 kb on - strandat 672.282 kb on - strandat 672.284 kb on + strandat 672.350 kb on - strandat 672.357 kb on + strandat 672.357 kb on + strandat 672.357 kb on + strandat 672.358 kb on - strandat 672.358 kb on - strandat 672.358 kb on - strandat 672.358 kb on - strandat 672.358 kb on - strandat 672.358 kb on - strandat 672.358 kb on - strandat 672.358 kb on - strandat 672.358 kb on - strandat 672.358 kb on - strandat 672.364 kb on - strandat 672.364 kb on - strandat 672.377 kb on - strandat 672.378 kb on + strandat 672.412 kb on - strand, within Pf1N1B4_580at 672.412 kb on - strand, within Pf1N1B4_580at 672.412 kb on - strand, within Pf1N1B4_580at 672.412 kb on - strand, within Pf1N1B4_580

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml
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670,125 - Pf1N1B4_577 0.18 +0.3
670,133 + Pf1N1B4_577 0.18 +0.3
670,133 + Pf1N1B4_577 0.18 -2.4
670,133 + Pf1N1B4_577 0.18 -2.2
670,146 + Pf1N1B4_577 0.20 +0.7
670,146 + Pf1N1B4_577 0.20 -1.7
670,147 - +2.5
670,147 - Pf1N1B4_577 0.20 +0.2
670,147 - Pf1N1B4_577 0.20 -0.3
670,282 - Pf1N1B4_577 0.34 -0.7
670,282 - Pf1N1B4_577 0.34 -0.7
670,307 + Pf1N1B4_577 0.37 -0.1
670,307 + Pf1N1B4_577 0.37 +0.1
670,308 - Pf1N1B4_577 0.37 -1.7
670,308 - Pf1N1B4_577 0.37 -1.1
670,322 + Pf1N1B4_577 0.38 +1.3
670,322 + Pf1N1B4_577 0.38 +0.9
670,322 + Pf1N1B4_577 0.38 -1.8
670,323 - +2.9
670,323 - Pf1N1B4_577 0.39 +0.3
670,559 + Pf1N1B4_577 0.63 +1.7
670,559 + Pf1N1B4_577 0.63 -0.8
670,559 + Pf1N1B4_577 0.63 -0.4
670,560 - Pf1N1B4_577 0.64 -2.1
670,783 + Pf1N1B4_577 0.87 -0.7
670,783 + Pf1N1B4_577 0.87 -2.4
670,783 + Pf1N1B4_577 0.87 -1.2
671,006 + Pf1N1B4_578 0.12 -2.0
671,119 + Pf1N1B4_578 0.36 -0.7
671,195 + Pf1N1B4_578 0.52 -0.9
671,196 - Pf1N1B4_578 0.52 -1.7
671,197 + Pf1N1B4_578 0.53 -0.1
671,292 + -0.1
671,292 + Pf1N1B4_578 0.73 +0.3
671,422 + -0.1
671,422 + -1.4
671,423 - -1.1
671,458 + +1.5
671,458 + -1.0
671,665 - Pf1N1B4_579 0.19 -0.2
671,665 - Pf1N1B4_579 0.19 -0.1
671,789 + Pf1N1B4_579 0.33 +0.9
671,801 + Pf1N1B4_579 0.35 +0.3
671,802 - Pf1N1B4_579 0.35 -0.7
671,802 - Pf1N1B4_579 0.35 +1.2
671,802 - Pf1N1B4_579 0.35 +2.5
671,802 - Pf1N1B4_579 0.35 +1.7
671,802 - -1.1
671,852 + Pf1N1B4_579 0.41 -1.9
671,852 + Pf1N1B4_579 0.41 -0.4
671,852 + Pf1N1B4_579 0.41 +2.2
671,853 - Pf1N1B4_579 0.41 -1.7
671,853 - Pf1N1B4_579 0.41 +1.9
671,853 - Pf1N1B4_579 0.41 +1.3
671,853 - Pf1N1B4_579 0.41 -0.9
671,853 - Pf1N1B4_579 0.41 -0.4
671,856 + Pf1N1B4_579 0.41 -0.7
671,856 + Pf1N1B4_579 0.41 -1.1
671,857 - Pf1N1B4_579 0.41 -1.7
672,281 + -0.6
672,281 + -1.1
672,281 + -2.1
672,281 + -1.4
672,281 + -0.1
672,281 + -0.1
672,281 + -0.6
672,281 + -0.1
672,281 + -0.1
672,281 + -0.5
672,282 - +1.1
672,282 - -0.1
672,282 - +0.6
672,282 - +0.6
672,284 + +1.4
672,350 - -0.1
672,357 + -2.4
672,357 + +1.2
672,357 + -0.5
672,358 - -1.9
672,358 - -0.1
672,358 - -0.3
672,358 - -0.4
672,358 - -3.8
672,358 - -1.4
672,358 - +0.0
672,358 - -1.6
672,358 - +0.6
672,358 - -0.8
672,364 - -0.1
672,364 - -1.6
672,377 - -0.1
672,378 + +0.5
672,412 - Pf1N1B4_580 0.18 -0.1
672,412 - Pf1N1B4_580 0.18 -0.5
672,412 - Pf1N1B4_580 0.18 +0.9
672,412 - Pf1N1B4_580 0.18 -0.2

Or see this region's nucleotide sequence