Experiment: Rifampicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_567 and Pf1N1B4_568 are separated by 133 nucleotides Pf1N1B4_568 and Pf1N1B4_569 overlap by 4 nucleotides Pf1N1B4_569 and Pf1N1B4_570 are separated by 172 nucleotides Pf1N1B4_570 and Pf1N1B4_571 are separated by 191 nucleotides
Pf1N1B4_567 - Histone acetyltransferase HPA2 and related acetyltransferases, at 662,801 to 663,220
_567
Pf1N1B4_568 - Peptide deformylase (EC 3.5.1.88), at 663,354 to 663,893
_568
Pf1N1B4_569 - Ribonuclease BN (EC 3.1.-.-), at 663,890 to 664,834
_569
Pf1N1B4_570 - hypothetical protein, at 665,007 to 665,198
_570
Pf1N1B4_571 - FIG00954271: hypothetical protein, at 665,390 to 665,767
_571
Position (kb) 663
664
665 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 662.943 kb on + strand at 662.943 kb on + strand, within Pf1N1B4_567 at 662.943 kb on + strand, within Pf1N1B4_567 at 662.943 kb on + strand, within Pf1N1B4_567 at 663.102 kb on - strand at 663.102 kb on - strand, within Pf1N1B4_567 at 663.102 kb on - strand, within Pf1N1B4_567 at 663.118 kb on + strand, within Pf1N1B4_567 at 663.119 kb on - strand, within Pf1N1B4_567 at 663.277 kb on - strand at 663.439 kb on - strand, within Pf1N1B4_568 at 664.060 kb on + strand, within Pf1N1B4_569 at 664.061 kb on - strand at 664.061 kb on - strand, within Pf1N1B4_569 at 664.062 kb on + strand, within Pf1N1B4_569 at 664.063 kb on - strand, within Pf1N1B4_569 at 664.063 kb on - strand, within Pf1N1B4_569 at 664.063 kb on - strand, within Pf1N1B4_569 at 664.063 kb on - strand at 664.063 kb on - strand, within Pf1N1B4_569 at 664.069 kb on - strand, within Pf1N1B4_569 at 664.104 kb on + strand, within Pf1N1B4_569 at 664.104 kb on + strand at 664.105 kb on - strand, within Pf1N1B4_569 at 664.105 kb on - strand, within Pf1N1B4_569 at 664.117 kb on - strand, within Pf1N1B4_569 at 664.117 kb on - strand at 664.137 kb on + strand, within Pf1N1B4_569 at 664.137 kb on + strand at 664.138 kb on - strand, within Pf1N1B4_569 at 664.202 kb on - strand, within Pf1N1B4_569 at 664.268 kb on + strand, within Pf1N1B4_569 at 664.416 kb on + strand at 664.470 kb on + strand, within Pf1N1B4_569 at 664.471 kb on - strand, within Pf1N1B4_569 at 664.471 kb on - strand, within Pf1N1B4_569 at 664.471 kb on - strand, within Pf1N1B4_569 at 664.746 kb on + strand at 664.746 kb on + strand at 664.747 kb on - strand at 664.747 kb on - strand at 664.747 kb on - strand at 664.747 kb on - strand at 664.747 kb on - strand at 664.747 kb on - strand at 664.747 kb on - strand at 664.747 kb on - strand at 664.783 kb on + strand at 664.784 kb on - strand at 664.892 kb on + strand at 664.892 kb on + strand at 664.907 kb on + strand at 664.907 kb on + strand at 664.907 kb on + strand at 664.907 kb on + strand at 664.907 kb on + strand at 664.936 kb on + strand at 664.936 kb on + strand at 664.936 kb on + strand at 664.938 kb on + strand at 664.938 kb on + strand at 664.938 kb on + strand at 664.938 kb on + strand at 664.938 kb on + strand at 664.938 kb on + strand at 664.938 kb on + strand at 665.009 kb on - strand at 665.180 kb on + strand at 665.201 kb on + strand at 665.201 kb on + strand at 665.202 kb on - strand at 665.278 kb on + strand at 665.282 kb on + strand at 665.282 kb on + strand at 665.283 kb on - strand at 665.305 kb on + strand at 665.312 kb on + strand at 665.313 kb on - strand at 665.347 kb on + strand at 665.347 kb on + strand at 665.347 kb on + strand at 665.347 kb on + strand at 665.347 kb on + strand at 665.348 kb on - strand at 665.497 kb on + strand, within Pf1N1B4_571 at 665.498 kb on - strand, within Pf1N1B4_571 at 665.498 kb on - strand, within Pf1N1B4_571 at 665.599 kb on + strand, within Pf1N1B4_571 at 665.599 kb on + strand, within Pf1N1B4_571 at 665.599 kb on + strand, within Pf1N1B4_571 at 665.599 kb on + strand, within Pf1N1B4_571 at 665.599 kb on + strand, within Pf1N1B4_571 at 665.599 kb on + strand, within Pf1N1B4_571 at 665.599 kb on + strand, within Pf1N1B4_571 at 665.599 kb on + strand, within Pf1N1B4_571 at 665.600 kb on - strand at 665.600 kb on - strand, within Pf1N1B4_571 at 665.600 kb on - strand, within Pf1N1B4_571 at 665.600 kb on - strand, within Pf1N1B4_571 at 665.708 kb on + strand, within Pf1N1B4_571 at 665.709 kb on - strand, within Pf1N1B4_571 at 665.709 kb on - strand, within Pf1N1B4_571
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml remove 662,943 + +0.9 662,943 + Pf1N1B4_567 0.34 -0.7 662,943 + Pf1N1B4_567 0.34 +0.9 662,943 + Pf1N1B4_567 0.34 +2.3 663,102 - +0.9 663,102 - Pf1N1B4_567 0.72 +0.6 663,102 - Pf1N1B4_567 0.72 -0.9 663,118 + Pf1N1B4_567 0.75 -0.1 663,119 - Pf1N1B4_567 0.76 -0.2 663,277 - +0.3 663,439 - Pf1N1B4_568 0.16 -0.9 664,060 + Pf1N1B4_569 0.18 -0.2 664,061 - +2.9 664,061 - Pf1N1B4_569 0.18 +1.3 664,062 + Pf1N1B4_569 0.18 -0.7 664,063 - Pf1N1B4_569 0.18 -0.7 664,063 - Pf1N1B4_569 0.18 +1.5 664,063 - Pf1N1B4_569 0.18 -1.1 664,063 - -1.7 664,063 - Pf1N1B4_569 0.18 +1.5 664,069 - Pf1N1B4_569 0.19 +0.2 664,104 + Pf1N1B4_569 0.23 +1.4 664,104 + +0.9 664,105 - Pf1N1B4_569 0.23 +0.1 664,105 - Pf1N1B4_569 0.23 +2.8 664,117 - Pf1N1B4_569 0.24 -0.1 664,117 - +2.5 664,137 + Pf1N1B4_569 0.26 +1.3 664,137 + +0.9 664,138 - Pf1N1B4_569 0.26 +1.3 664,202 - Pf1N1B4_569 0.33 -1.7 664,268 + Pf1N1B4_569 0.40 -0.4 664,416 + -0.7 664,470 + Pf1N1B4_569 0.61 -0.7 664,471 - Pf1N1B4_569 0.61 +0.8 664,471 - Pf1N1B4_569 0.61 -0.7 664,471 - Pf1N1B4_569 0.61 +1.9 664,746 + +2.1 664,746 + -0.4 664,747 - +2.5 664,747 - +1.7 664,747 - -1.9 664,747 - +0.9 664,747 - +0.5 664,747 - +0.9 664,747 - -0.7 664,747 - -1.4 664,783 + +0.1 664,784 - +1.9 664,892 + +0.9 664,892 + +1.7 664,907 + +1.6 664,907 + -0.9 664,907 + -0.8 664,907 + +1.9 664,907 + -0.1 664,936 + -2.4 664,936 + +0.3 664,936 + +0.3 664,938 + +1.1 664,938 + +0.2 664,938 + -0.7 664,938 + -0.4 664,938 + +0.9 664,938 + -0.7 664,938 + +0.2 665,009 - -0.2 665,180 + +1.2 665,201 + +1.5 665,201 + -0.5 665,202 - -0.7 665,278 + +2.3 665,282 + +0.3 665,282 + +1.8 665,283 - +0.6 665,305 + +0.9 665,312 + -0.9 665,313 - -0.4 665,347 + -2.1 665,347 + +2.3 665,347 + +0.5 665,347 + +0.2 665,347 + -1.9 665,348 - +0.5 665,497 + Pf1N1B4_571 0.28 -1.1 665,498 - Pf1N1B4_571 0.29 +0.9 665,498 - Pf1N1B4_571 0.29 -0.8 665,599 + Pf1N1B4_571 0.55 -0.2 665,599 + Pf1N1B4_571 0.55 -1.9 665,599 + Pf1N1B4_571 0.55 +1.2 665,599 + Pf1N1B4_571 0.55 -1.3 665,599 + Pf1N1B4_571 0.55 +2.5 665,599 + Pf1N1B4_571 0.55 +0.9 665,599 + Pf1N1B4_571 0.55 -1.4 665,599 + Pf1N1B4_571 0.55 +3.3 665,600 - -1.1 665,600 - Pf1N1B4_571 0.56 -0.1 665,600 - Pf1N1B4_571 0.56 +0.3 665,600 - Pf1N1B4_571 0.56 -1.4 665,708 + Pf1N1B4_571 0.84 +0.1 665,709 - Pf1N1B4_571 0.84 -0.8 665,709 - Pf1N1B4_571 0.84 -0.1
Or see this region's nucleotide sequence