Experiment: Rifampicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4428 and Pf1N1B4_4429 are separated by 17 nucleotides Pf1N1B4_4429 and Pf1N1B4_4430 overlap by 4 nucleotides Pf1N1B4_4430 and Pf1N1B4_4431 overlap by 4 nucleotides
Pf1N1B4_4428 - ABC-type polar amino acid transport system, ATPase component, at 4,888,471 to 4,889,307
_4428
Pf1N1B4_4429 - No significant database matches, at 4,889,325 to 4,889,921
_4429
Pf1N1B4_4430 - Cystathionine beta-lyase (EC 4.4.1.8), at 4,889,918 to 4,892,677
_4430
Pf1N1B4_4431 - Permeases of the major facilitator superfamily, at 4,892,674 to 4,893,861
_4431
Position (kb) 4889
4890
4891
4892
4893 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4889.305 kb on + strand at 4889.556 kb on + strand, within Pf1N1B4_4429 at 4889.557 kb on - strand, within Pf1N1B4_4429 at 4889.649 kb on + strand, within Pf1N1B4_4429 at 4889.649 kb on + strand, within Pf1N1B4_4429 at 4889.649 kb on + strand, within Pf1N1B4_4429 at 4889.877 kb on + strand at 4889.877 kb on + strand at 4889.878 kb on - strand at 4889.878 kb on - strand at 4889.914 kb on - strand at 4890.185 kb on - strand at 4890.185 kb on - strand at 4890.274 kb on - strand, within Pf1N1B4_4430 at 4890.292 kb on + strand, within Pf1N1B4_4430 at 4890.293 kb on - strand, within Pf1N1B4_4430 at 4890.555 kb on - strand, within Pf1N1B4_4430 at 4890.860 kb on + strand, within Pf1N1B4_4430 at 4890.959 kb on + strand, within Pf1N1B4_4430 at 4890.959 kb on + strand, within Pf1N1B4_4430 at 4890.959 kb on + strand, within Pf1N1B4_4430 at 4890.959 kb on + strand at 4890.960 kb on - strand, within Pf1N1B4_4430 at 4891.261 kb on + strand, within Pf1N1B4_4430 at 4891.262 kb on - strand, within Pf1N1B4_4430 at 4891.677 kb on - strand, within Pf1N1B4_4430 at 4891.757 kb on + strand, within Pf1N1B4_4430 at 4891.758 kb on - strand, within Pf1N1B4_4430 at 4891.800 kb on - strand, within Pf1N1B4_4430 at 4891.800 kb on - strand, within Pf1N1B4_4430 at 4891.961 kb on + strand, within Pf1N1B4_4430 at 4891.988 kb on + strand, within Pf1N1B4_4430 at 4891.989 kb on - strand, within Pf1N1B4_4430 at 4891.989 kb on - strand, within Pf1N1B4_4430 at 4892.043 kb on + strand, within Pf1N1B4_4430 at 4892.043 kb on + strand, within Pf1N1B4_4430 at 4892.133 kb on - strand, within Pf1N1B4_4430 at 4892.133 kb on - strand, within Pf1N1B4_4430 at 4892.296 kb on - strand, within Pf1N1B4_4430 at 4892.296 kb on - strand, within Pf1N1B4_4430 at 4892.296 kb on - strand, within Pf1N1B4_4430 at 4892.465 kb on + strand at 4892.465 kb on + strand at 4892.466 kb on - strand at 4892.466 kb on - strand at 4892.525 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml remove 4,889,305 + +0.2 4,889,556 + Pf1N1B4_4429 0.39 -1.7 4,889,557 - Pf1N1B4_4429 0.39 +0.6 4,889,649 + Pf1N1B4_4429 0.54 -0.5 4,889,649 + Pf1N1B4_4429 0.54 +0.7 4,889,649 + Pf1N1B4_4429 0.54 -0.4 4,889,877 + -1.7 4,889,877 + -0.4 4,889,878 - -0.1 4,889,878 - -2.0 4,889,914 - +0.6 4,890,185 - -1.4 4,890,185 - +0.2 4,890,274 - Pf1N1B4_4430 0.13 +1.6 4,890,292 + Pf1N1B4_4430 0.14 +1.1 4,890,293 - Pf1N1B4_4430 0.14 -0.1 4,890,555 - Pf1N1B4_4430 0.23 +0.2 4,890,860 + Pf1N1B4_4430 0.34 -3.0 4,890,959 + Pf1N1B4_4430 0.38 +1.6 4,890,959 + Pf1N1B4_4430 0.38 +0.7 4,890,959 + Pf1N1B4_4430 0.38 +1.6 4,890,959 + +2.8 4,890,960 - Pf1N1B4_4430 0.38 +0.6 4,891,261 + Pf1N1B4_4430 0.49 +1.0 4,891,262 - Pf1N1B4_4430 0.49 -0.8 4,891,677 - Pf1N1B4_4430 0.64 +0.2 4,891,757 + Pf1N1B4_4430 0.67 +0.3 4,891,758 - Pf1N1B4_4430 0.67 -0.4 4,891,800 - Pf1N1B4_4430 0.68 -1.7 4,891,800 - Pf1N1B4_4430 0.68 -2.0 4,891,961 + Pf1N1B4_4430 0.74 -0.5 4,891,988 + Pf1N1B4_4430 0.75 +2.1 4,891,989 - Pf1N1B4_4430 0.75 +0.6 4,891,989 - Pf1N1B4_4430 0.75 +0.5 4,892,043 + Pf1N1B4_4430 0.77 +1.6 4,892,043 + Pf1N1B4_4430 0.77 -0.7 4,892,133 - Pf1N1B4_4430 0.80 -0.1 4,892,133 - Pf1N1B4_4430 0.80 -1.4 4,892,296 - Pf1N1B4_4430 0.86 +0.9 4,892,296 - Pf1N1B4_4430 0.86 -0.4 4,892,296 - Pf1N1B4_4430 0.86 +0.4 4,892,465 + +1.2 4,892,465 + +0.9 4,892,466 - +0.2 4,892,466 - -0.7 4,892,525 + +0.6
Or see this region's nucleotide sequence