Experiment: Rifampicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4251 and Pf1N1B4_4252 are separated by 138 nucleotides Pf1N1B4_4252 and Pf1N1B4_4253 overlap by 8 nucleotides Pf1N1B4_4253 and Pf1N1B4_4254 are separated by 448 nucleotides Pf1N1B4_4254 and Pf1N1B4_4255 are separated by 75 nucleotides
Pf1N1B4_4251 - Outer membrane receptor proteins, likely involved in siderophore uptake @ TonB-dependent siderophore receptor, at 4,713,227 to 4,715,590
_4251
Pf1N1B4_4252 - hypothetical protein, at 4,715,729 to 4,716,265
_4252
Pf1N1B4_4253 - RNA polymerase sigma-70 factor, ECF subfamily, at 4,716,258 to 4,716,791
_4253
Pf1N1B4_4254 - Sensory box histidine kinase/response regulator, at 4,717,240 to 4,717,617
_4254
Pf1N1B4_4255 - Putative phosphatase YfbT, at 4,717,693 to 4,718,361
_4255
Position (kb)
4716
4717 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4715.282 kb on + strand, within Pf1N1B4_4251 at 4715.494 kb on - strand at 4715.494 kb on - strand at 4715.618 kb on + strand at 4715.754 kb on + strand at 4715.763 kb on + strand at 4715.764 kb on - strand at 4715.881 kb on + strand, within Pf1N1B4_4252 at 4715.881 kb on + strand, within Pf1N1B4_4252 at 4715.915 kb on + strand, within Pf1N1B4_4252 at 4716.331 kb on + strand, within Pf1N1B4_4253 at 4716.382 kb on + strand, within Pf1N1B4_4253 at 4716.450 kb on + strand, within Pf1N1B4_4253 at 4716.613 kb on + strand, within Pf1N1B4_4253 at 4716.614 kb on - strand, within Pf1N1B4_4253 at 4717.075 kb on + strand at 4717.115 kb on - strand at 4717.149 kb on + strand at 4717.150 kb on - strand at 4717.150 kb on - strand at 4717.150 kb on - strand at 4717.155 kb on + strand at 4717.156 kb on - strand at 4717.651 kb on + strand at 4717.651 kb on + strand at 4717.651 kb on + strand at 4717.651 kb on + strand at 4717.652 kb on - strand at 4717.652 kb on - strand at 4717.652 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml remove 4,715,282 + Pf1N1B4_4251 0.87 +0.4 4,715,494 - -0.4 4,715,494 - -0.6 4,715,618 + -0.1 4,715,754 + -1.5 4,715,763 + -0.4 4,715,764 - -0.9 4,715,881 + Pf1N1B4_4252 0.28 -0.3 4,715,881 + Pf1N1B4_4252 0.28 -0.3 4,715,915 + Pf1N1B4_4252 0.35 +0.7 4,716,331 + Pf1N1B4_4253 0.14 +0.1 4,716,382 + Pf1N1B4_4253 0.23 -0.9 4,716,450 + Pf1N1B4_4253 0.36 -0.7 4,716,613 + Pf1N1B4_4253 0.66 -1.3 4,716,614 - Pf1N1B4_4253 0.67 -2.3 4,717,075 + +0.1 4,717,115 - -0.9 4,717,149 + +1.1 4,717,150 - -0.3 4,717,150 - -0.1 4,717,150 - -0.3 4,717,155 + -1.3 4,717,156 - -0.9 4,717,651 + -2.4 4,717,651 + -1.4 4,717,651 + +0.9 4,717,651 + +0.4 4,717,652 - +2.0 4,717,652 - +0.2 4,717,652 - -1.7
Or see this region's nucleotide sequence