Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_414

Experiment: Rifampicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_413 and Pf1N1B4_414 are separated by 60 nucleotidesPf1N1B4_414 and Pf1N1B4_415 are separated by 242 nucleotides Pf1N1B4_413 - L-arabinolactonase (EC 3.1.1.15) (from data), at 482,629 to 483,573 _413 Pf1N1B4_414 - transcriptional regulator, at 483,634 to 484,350 _414 Pf1N1B4_415 - Lipase precursor (EC 3.1.1.3), at 484,593 to 485,471 _415 Position (kb) 483 484 485Strain fitness (log2 ratio) -2 -1 0 1 2 3at 482.668 kb on + strandat 482.668 kb on + strandat 482.668 kb on + strandat 482.668 kb on + strandat 482.668 kb on + strandat 482.668 kb on + strandat 482.668 kb on + strandat 482.669 kb on - strandat 482.669 kb on - strandat 482.732 kb on + strand, within Pf1N1B4_413at 482.732 kb on + strand, within Pf1N1B4_413at 482.732 kb on + strand, within Pf1N1B4_413at 482.732 kb on + strand, within Pf1N1B4_413at 482.733 kb on - strand, within Pf1N1B4_413at 482.810 kb on + strand, within Pf1N1B4_413at 482.811 kb on - strand, within Pf1N1B4_413at 482.863 kb on + strand, within Pf1N1B4_413at 482.863 kb on + strand, within Pf1N1B4_413at 482.863 kb on + strand, within Pf1N1B4_413at 482.863 kb on + strand, within Pf1N1B4_413at 482.863 kb on + strand, within Pf1N1B4_413at 482.863 kb on + strand, within Pf1N1B4_413at 482.863 kb on + strandat 482.863 kb on + strand, within Pf1N1B4_413at 482.864 kb on - strand, within Pf1N1B4_413at 482.864 kb on - strand, within Pf1N1B4_413at 482.864 kb on - strand, within Pf1N1B4_413at 482.864 kb on - strand, within Pf1N1B4_413at 482.864 kb on - strand, within Pf1N1B4_413at 482.864 kb on - strand, within Pf1N1B4_413at 482.864 kb on - strand, within Pf1N1B4_413at 482.864 kb on - strand, within Pf1N1B4_413at 482.864 kb on - strand, within Pf1N1B4_413at 482.867 kb on + strand, within Pf1N1B4_413at 482.867 kb on + strand, within Pf1N1B4_413at 482.867 kb on + strand, within Pf1N1B4_413at 482.867 kb on + strand, within Pf1N1B4_413at 482.868 kb on - strand, within Pf1N1B4_413at 482.868 kb on - strand, within Pf1N1B4_413at 482.868 kb on - strand, within Pf1N1B4_413at 482.868 kb on - strand, within Pf1N1B4_413at 482.868 kb on - strand, within Pf1N1B4_413at 482.868 kb on - strand, within Pf1N1B4_413at 482.868 kb on - strand, within Pf1N1B4_413at 482.930 kb on + strand, within Pf1N1B4_413at 482.930 kb on + strand, within Pf1N1B4_413at 482.930 kb on + strand, within Pf1N1B4_413at 482.931 kb on - strand, within Pf1N1B4_413at 482.931 kb on - strand, within Pf1N1B4_413at 482.931 kb on - strand, within Pf1N1B4_413at 482.931 kb on - strand, within Pf1N1B4_413at 482.931 kb on - strand, within Pf1N1B4_413at 482.931 kb on - strand, within Pf1N1B4_413at 483.002 kb on + strand, within Pf1N1B4_413at 483.003 kb on - strand, within Pf1N1B4_413at 483.049 kb on + strand, within Pf1N1B4_413at 483.049 kb on + strand, within Pf1N1B4_413at 483.050 kb on - strand, within Pf1N1B4_413at 483.058 kb on + strand, within Pf1N1B4_413at 483.058 kb on + strand, within Pf1N1B4_413at 483.059 kb on - strand, within Pf1N1B4_413at 483.059 kb on - strand, within Pf1N1B4_413at 483.059 kb on - strand, within Pf1N1B4_413at 483.061 kb on + strand, within Pf1N1B4_413at 483.124 kb on + strand, within Pf1N1B4_413at 483.418 kb on + strand, within Pf1N1B4_413at 483.418 kb on + strand, within Pf1N1B4_413at 483.419 kb on - strand, within Pf1N1B4_413at 483.419 kb on - strandat 483.519 kb on + strandat 483.520 kb on - strandat 483.528 kb on + strandat 483.529 kb on - strandat 483.529 kb on - strandat 483.529 kb on - strandat 483.635 kb on + strandat 483.636 kb on - strandat 483.926 kb on + strand, within Pf1N1B4_414at 483.965 kb on + strand, within Pf1N1B4_414at 483.965 kb on + strand, within Pf1N1B4_414at 483.966 kb on - strand, within Pf1N1B4_414at 483.966 kb on - strandat 483.966 kb on - strandat 483.966 kb on - strand, within Pf1N1B4_414at 484.148 kb on - strand, within Pf1N1B4_414at 484.523 kb on - strandat 484.523 kb on - strandat 484.527 kb on + strandat 484.527 kb on + strandat 484.527 kb on + strandat 484.528 kb on - strandat 484.588 kb on + strandat 484.588 kb on + strandat 484.589 kb on - strandat 484.592 kb on + strandat 484.592 kb on + strandat 484.592 kb on + strandat 484.592 kb on + strandat 484.592 kb on + strandat 484.593 kb on - strandat 484.617 kb on - strandat 484.624 kb on - strandat 484.624 kb on - strandat 484.680 kb on + strandat 484.870 kb on - strand, within Pf1N1B4_415at 484.874 kb on - strandat 484.996 kb on + strand, within Pf1N1B4_415at 485.124 kb on + strand, within Pf1N1B4_415at 485.124 kb on + strand, within Pf1N1B4_415at 485.125 kb on - strand, within Pf1N1B4_415at 485.184 kb on + strand, within Pf1N1B4_415at 485.184 kb on + strandat 485.184 kb on + strand, within Pf1N1B4_415at 485.184 kb on + strand, within Pf1N1B4_415at 485.184 kb on + strand, within Pf1N1B4_415at 485.184 kb on + strand, within Pf1N1B4_415at 485.184 kb on + strand, within Pf1N1B4_415at 485.184 kb on + strandat 485.185 kb on - strand, within Pf1N1B4_415at 485.185 kb on - strand, within Pf1N1B4_415at 485.185 kb on - strand, within Pf1N1B4_415at 485.187 kb on + strandat 485.187 kb on + strand, within Pf1N1B4_415at 485.187 kb on + strand, within Pf1N1B4_415at 485.187 kb on + strand, within Pf1N1B4_415at 485.187 kb on + strand, within Pf1N1B4_415at 485.188 kb on - strand, within Pf1N1B4_415at 485.188 kb on - strand, within Pf1N1B4_415at 485.188 kb on - strand, within Pf1N1B4_415at 485.188 kb on - strand, within Pf1N1B4_415at 485.188 kb on - strand, within Pf1N1B4_415at 485.188 kb on - strand, within Pf1N1B4_415at 485.190 kb on + strand, within Pf1N1B4_415at 485.190 kb on + strand, within Pf1N1B4_415at 485.190 kb on + strand, within Pf1N1B4_415at 485.190 kb on + strand, within Pf1N1B4_415at 485.191 kb on - strandat 485.209 kb on + strand, within Pf1N1B4_415at 485.258 kb on + strand, within Pf1N1B4_415at 485.259 kb on - strand, within Pf1N1B4_415at 485.259 kb on - strand, within Pf1N1B4_415at 485.280 kb on + strand, within Pf1N1B4_415at 485.280 kb on + strand, within Pf1N1B4_415at 485.280 kb on + strandat 485.319 kb on + strand, within Pf1N1B4_415

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml
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482,668 + -0.1
482,668 + -0.1
482,668 + -0.7
482,668 + -0.4
482,668 + +0.2
482,668 + +0.1
482,668 + -0.1
482,669 - -1.5
482,669 - +1.0
482,732 + Pf1N1B4_413 0.11 +0.5
482,732 + Pf1N1B4_413 0.11 +0.5
482,732 + Pf1N1B4_413 0.11 -0.7
482,732 + Pf1N1B4_413 0.11 +0.2
482,733 - Pf1N1B4_413 0.11 -0.7
482,810 + Pf1N1B4_413 0.19 -0.1
482,811 - Pf1N1B4_413 0.19 -0.1
482,863 + Pf1N1B4_413 0.25 -1.4
482,863 + Pf1N1B4_413 0.25 +0.2
482,863 + Pf1N1B4_413 0.25 -1.1
482,863 + Pf1N1B4_413 0.25 -0.9
482,863 + Pf1N1B4_413 0.25 -0.1
482,863 + Pf1N1B4_413 0.25 -0.2
482,863 + +0.9
482,863 + Pf1N1B4_413 0.25 -0.3
482,864 - Pf1N1B4_413 0.25 +0.5
482,864 - Pf1N1B4_413 0.25 -0.9
482,864 - Pf1N1B4_413 0.25 -0.1
482,864 - Pf1N1B4_413 0.25 -1.1
482,864 - Pf1N1B4_413 0.25 -2.1
482,864 - Pf1N1B4_413 0.25 -1.7
482,864 - Pf1N1B4_413 0.25 -0.7
482,864 - Pf1N1B4_413 0.25 +0.5
482,864 - Pf1N1B4_413 0.25 +1.3
482,867 + Pf1N1B4_413 0.25 +0.3
482,867 + Pf1N1B4_413 0.25 -1.8
482,867 + Pf1N1B4_413 0.25 -1.0
482,867 + Pf1N1B4_413 0.25 -1.1
482,868 - Pf1N1B4_413 0.25 -2.0
482,868 - Pf1N1B4_413 0.25 -0.3
482,868 - Pf1N1B4_413 0.25 +0.9
482,868 - Pf1N1B4_413 0.25 +0.3
482,868 - Pf1N1B4_413 0.25 -1.1
482,868 - Pf1N1B4_413 0.25 +0.5
482,868 - Pf1N1B4_413 0.25 +0.9
482,930 + Pf1N1B4_413 0.32 -1.9
482,930 + Pf1N1B4_413 0.32 +1.3
482,930 + Pf1N1B4_413 0.32 -1.9
482,931 - Pf1N1B4_413 0.32 +0.6
482,931 - Pf1N1B4_413 0.32 -1.8
482,931 - Pf1N1B4_413 0.32 +0.5
482,931 - Pf1N1B4_413 0.32 -0.7
482,931 - Pf1N1B4_413 0.32 -0.0
482,931 - Pf1N1B4_413 0.32 -0.1
483,002 + Pf1N1B4_413 0.39 -1.7
483,003 - Pf1N1B4_413 0.40 -2.4
483,049 + Pf1N1B4_413 0.44 -0.3
483,049 + Pf1N1B4_413 0.44 +0.6
483,050 - Pf1N1B4_413 0.45 +0.5
483,058 + Pf1N1B4_413 0.45 -0.1
483,058 + Pf1N1B4_413 0.45 -1.1
483,059 - Pf1N1B4_413 0.46 -0.8
483,059 - Pf1N1B4_413 0.46 +0.9
483,059 - Pf1N1B4_413 0.46 -2.1
483,061 + Pf1N1B4_413 0.46 -1.9
483,124 + Pf1N1B4_413 0.52 +0.2
483,418 + Pf1N1B4_413 0.83 +0.4
483,418 + Pf1N1B4_413 0.83 +0.9
483,419 - Pf1N1B4_413 0.84 +0.6
483,419 - -0.7
483,519 + +0.2
483,520 - +0.9
483,528 + -2.5
483,529 - -1.4
483,529 - -0.4
483,529 - -1.4
483,635 + -2.7
483,636 - +0.2
483,926 + Pf1N1B4_414 0.41 -0.7
483,965 + Pf1N1B4_414 0.46 -1.2
483,965 + Pf1N1B4_414 0.46 -0.4
483,966 - Pf1N1B4_414 0.46 -0.5
483,966 - +0.9
483,966 - -0.7
483,966 - Pf1N1B4_414 0.46 -1.2
484,148 - Pf1N1B4_414 0.72 -1.4
484,523 - -0.7
484,523 - -0.3
484,527 + +0.9
484,527 + +0.9
484,527 + +1.2
484,528 - +0.3
484,588 + +0.4
484,588 + -0.9
484,589 - -0.7
484,592 + -1.2
484,592 + -0.4
484,592 + -0.2
484,592 + -0.6
484,592 + +0.2
484,593 - -0.1
484,617 - -0.0
484,624 - -0.1
484,624 - -1.1
484,680 + -0.9
484,870 - Pf1N1B4_415 0.32 +0.0
484,874 - +0.3
484,996 + Pf1N1B4_415 0.46 -0.7
485,124 + Pf1N1B4_415 0.60 -0.1
485,124 + Pf1N1B4_415 0.60 +1.1
485,125 - Pf1N1B4_415 0.61 -0.3
485,184 + Pf1N1B4_415 0.67 -0.7
485,184 + -0.7
485,184 + Pf1N1B4_415 0.67 -0.1
485,184 + Pf1N1B4_415 0.67 -0.1
485,184 + Pf1N1B4_415 0.67 +1.3
485,184 + Pf1N1B4_415 0.67 -0.1
485,184 + Pf1N1B4_415 0.67 +2.5
485,184 + -0.7
485,185 - Pf1N1B4_415 0.67 +3.3
485,185 - Pf1N1B4_415 0.67 -1.9
485,185 - Pf1N1B4_415 0.67 -2.7
485,187 + -0.1
485,187 + Pf1N1B4_415 0.68 +0.9
485,187 + Pf1N1B4_415 0.68 -2.4
485,187 + Pf1N1B4_415 0.68 +1.8
485,187 + Pf1N1B4_415 0.68 -2.6
485,188 - Pf1N1B4_415 0.68 +0.7
485,188 - Pf1N1B4_415 0.68 -1.4
485,188 - Pf1N1B4_415 0.68 -1.9
485,188 - Pf1N1B4_415 0.68 +0.1
485,188 - Pf1N1B4_415 0.68 +0.0
485,188 - Pf1N1B4_415 0.68 +0.3
485,190 + Pf1N1B4_415 0.68 -1.1
485,190 + Pf1N1B4_415 0.68 +0.7
485,190 + Pf1N1B4_415 0.68 +0.3
485,190 + Pf1N1B4_415 0.68 +0.5
485,191 - +0.9
485,209 + Pf1N1B4_415 0.70 +0.2
485,258 + Pf1N1B4_415 0.76 +0.5
485,259 - Pf1N1B4_415 0.76 +0.9
485,259 - Pf1N1B4_415 0.76 -0.4
485,280 + Pf1N1B4_415 0.78 +0.6
485,280 + Pf1N1B4_415 0.78 +1.1
485,280 + +0.9
485,319 + Pf1N1B4_415 0.83 +0.3

Or see this region's nucleotide sequence