Experiment: Rifampicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_387 and Pf1N1B4_388 are separated by 120 nucleotides Pf1N1B4_388 and Pf1N1B4_389 overlap by 4 nucleotides Pf1N1B4_389 and Pf1N1B4_390 are separated by 9 nucleotides Pf1N1B4_390 and Pf1N1B4_391 are separated by 106 nucleotides
Pf1N1B4_387 - hypothetical protein, at 456,582 to 456,695
_387
Pf1N1B4_388 - OmpA family protein, at 456,816 to 457,628
_388
Pf1N1B4_389 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 457,625 to 457,981
_389
Pf1N1B4_390 - Extracellular solute-binding protein, family 3, at 457,991 to 458,827
_390
Pf1N1B4_391 - Electron transfer flavoprotein, alpha subunit, at 458,934 to 459,863
_391
Position (kb) 457
458 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 456.634 kb on + strand, within Pf1N1B4_387 at 456.634 kb on + strand, within Pf1N1B4_387 at 456.634 kb on + strand, within Pf1N1B4_387 at 456.635 kb on - strand, within Pf1N1B4_387 at 456.665 kb on + strand, within Pf1N1B4_387 at 456.673 kb on + strand, within Pf1N1B4_387 at 456.703 kb on + strand at 456.703 kb on + strand at 456.703 kb on + strand at 456.703 kb on + strand at 456.944 kb on + strand at 456.944 kb on + strand, within Pf1N1B4_388 at 456.945 kb on - strand, within Pf1N1B4_388 at 456.945 kb on - strand, within Pf1N1B4_388 at 456.945 kb on - strand, within Pf1N1B4_388 at 456.945 kb on - strand, within Pf1N1B4_388 at 456.945 kb on - strand at 456.945 kb on - strand, within Pf1N1B4_388 at 456.945 kb on - strand, within Pf1N1B4_388 at 456.945 kb on - strand, within Pf1N1B4_388 at 457.048 kb on + strand, within Pf1N1B4_388 at 457.049 kb on - strand, within Pf1N1B4_388 at 457.049 kb on - strand, within Pf1N1B4_388 at 457.366 kb on + strand, within Pf1N1B4_388 at 457.367 kb on - strand, within Pf1N1B4_388 at 457.381 kb on + strand, within Pf1N1B4_388 at 457.381 kb on + strand, within Pf1N1B4_388 at 457.381 kb on + strand, within Pf1N1B4_388 at 457.381 kb on + strand, within Pf1N1B4_388 at 457.381 kb on + strand, within Pf1N1B4_388 at 457.382 kb on - strand, within Pf1N1B4_388 at 457.387 kb on + strand, within Pf1N1B4_388 at 457.388 kb on - strand, within Pf1N1B4_388 at 457.388 kb on - strand, within Pf1N1B4_388 at 457.418 kb on - strand, within Pf1N1B4_388 at 457.418 kb on - strand, within Pf1N1B4_388 at 457.571 kb on - strand at 457.670 kb on - strand, within Pf1N1B4_389 at 457.898 kb on + strand, within Pf1N1B4_389 at 457.898 kb on + strand, within Pf1N1B4_389 at 457.898 kb on + strand, within Pf1N1B4_389 at 457.898 kb on + strand, within Pf1N1B4_389 at 457.898 kb on + strand, within Pf1N1B4_389 at 457.898 kb on + strand, within Pf1N1B4_389 at 457.898 kb on + strand, within Pf1N1B4_389 at 457.898 kb on + strand, within Pf1N1B4_389 at 457.898 kb on + strand, within Pf1N1B4_389 at 457.898 kb on + strand, within Pf1N1B4_389 at 457.898 kb on + strand, within Pf1N1B4_389 at 457.898 kb on + strand, within Pf1N1B4_389 at 457.898 kb on + strand, within Pf1N1B4_389 at 457.898 kb on + strand, within Pf1N1B4_389 at 457.898 kb on + strand, within Pf1N1B4_389 at 457.899 kb on - strand, within Pf1N1B4_389 at 457.899 kb on - strand, within Pf1N1B4_389 at 457.899 kb on - strand, within Pf1N1B4_389 at 457.899 kb on - strand, within Pf1N1B4_389 at 457.899 kb on - strand, within Pf1N1B4_389 at 457.899 kb on - strand, within Pf1N1B4_389 at 457.899 kb on - strand, within Pf1N1B4_389 at 457.975 kb on + strand at 457.975 kb on + strand at 457.976 kb on - strand at 457.976 kb on - strand at 457.982 kb on + strand at 457.983 kb on - strand at 457.992 kb on + strand at 458.113 kb on + strand, within Pf1N1B4_390 at 458.155 kb on + strand, within Pf1N1B4_390 at 458.257 kb on - strand, within Pf1N1B4_390 at 458.375 kb on + strand, within Pf1N1B4_390 at 458.375 kb on + strand, within Pf1N1B4_390 at 458.433 kb on + strand, within Pf1N1B4_390 at 458.441 kb on + strand, within Pf1N1B4_390 at 458.469 kb on + strand, within Pf1N1B4_390 at 458.499 kb on + strand, within Pf1N1B4_390 at 458.499 kb on + strand at 458.499 kb on + strand, within Pf1N1B4_390 at 458.499 kb on + strand, within Pf1N1B4_390 at 458.500 kb on - strand, within Pf1N1B4_390 at 458.500 kb on - strand, within Pf1N1B4_390 at 458.601 kb on + strand, within Pf1N1B4_390 at 458.673 kb on + strand, within Pf1N1B4_390 at 458.673 kb on + strand, within Pf1N1B4_390 at 458.673 kb on + strand, within Pf1N1B4_390 at 458.673 kb on + strand, within Pf1N1B4_390 at 458.673 kb on + strand, within Pf1N1B4_390 at 458.673 kb on + strand, within Pf1N1B4_390 at 458.673 kb on + strand, within Pf1N1B4_390 at 458.673 kb on + strand, within Pf1N1B4_390 at 458.673 kb on + strand, within Pf1N1B4_390 at 458.674 kb on - strand, within Pf1N1B4_390 at 458.674 kb on - strand, within Pf1N1B4_390 at 458.704 kb on - strand, within Pf1N1B4_390 at 458.795 kb on + strand at 458.840 kb on + strand at 458.840 kb on + strand at 458.841 kb on - strand at 458.841 kb on - strand at 458.850 kb on + strand at 458.872 kb on + strand at 458.872 kb on + strand at 458.915 kb on + strand at 458.915 kb on + strand at 458.915 kb on + strand at 458.916 kb on - strand at 458.916 kb on - strand at 458.916 kb on - strand at 458.916 kb on - strand at 458.916 kb on - strand at 458.916 kb on - strand at 458.916 kb on - strand at 458.917 kb on + strand at 458.917 kb on + strand at 458.917 kb on + strand at 458.917 kb on + strand at 458.917 kb on + strand at 458.917 kb on + strand at 458.917 kb on + strand at 458.917 kb on + strand at 458.917 kb on + strand at 458.917 kb on + strand at 458.917 kb on + strand at 458.917 kb on + strand at 458.918 kb on - strand at 458.918 kb on - strand at 458.918 kb on - strand at 458.918 kb on - strand at 458.935 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml remove 456,634 + Pf1N1B4_387 0.46 +0.1 456,634 + Pf1N1B4_387 0.46 +0.3 456,634 + Pf1N1B4_387 0.46 -0.4 456,635 - Pf1N1B4_387 0.46 -1.4 456,665 + Pf1N1B4_387 0.73 +1.9 456,673 + Pf1N1B4_387 0.80 +0.9 456,703 + +2.1 456,703 + -0.1 456,703 + +0.9 456,703 + +0.3 456,944 + -1.1 456,944 + Pf1N1B4_388 0.16 +0.5 456,945 - Pf1N1B4_388 0.16 +1.7 456,945 - Pf1N1B4_388 0.16 -0.7 456,945 - Pf1N1B4_388 0.16 -2.8 456,945 - Pf1N1B4_388 0.16 -1.6 456,945 - +0.9 456,945 - Pf1N1B4_388 0.16 -1.4 456,945 - Pf1N1B4_388 0.16 -3.2 456,945 - Pf1N1B4_388 0.16 -0.7 457,048 + Pf1N1B4_388 0.29 +0.3 457,049 - Pf1N1B4_388 0.29 -1.9 457,049 - Pf1N1B4_388 0.29 -3.7 457,366 + Pf1N1B4_388 0.68 -2.5 457,367 - Pf1N1B4_388 0.68 -0.8 457,381 + Pf1N1B4_388 0.69 -0.9 457,381 + Pf1N1B4_388 0.69 -1.1 457,381 + Pf1N1B4_388 0.69 +0.1 457,381 + Pf1N1B4_388 0.69 -1.5 457,381 + Pf1N1B4_388 0.69 -3.2 457,382 - Pf1N1B4_388 0.70 -2.5 457,387 + Pf1N1B4_388 0.70 -0.2 457,388 - Pf1N1B4_388 0.70 -1.7 457,388 - Pf1N1B4_388 0.70 -2.8 457,418 - Pf1N1B4_388 0.74 -1.4 457,418 - Pf1N1B4_388 0.74 -1.7 457,571 - -0.8 457,670 - Pf1N1B4_389 0.13 -2.7 457,898 + Pf1N1B4_389 0.76 -2.5 457,898 + Pf1N1B4_389 0.76 +1.3 457,898 + Pf1N1B4_389 0.76 -3.0 457,898 + Pf1N1B4_389 0.76 -3.7 457,898 + Pf1N1B4_389 0.76 -2.1 457,898 + Pf1N1B4_389 0.76 -0.9 457,898 + Pf1N1B4_389 0.76 -0.7 457,898 + Pf1N1B4_389 0.76 -1.1 457,898 + Pf1N1B4_389 0.76 -2.2 457,898 + Pf1N1B4_389 0.76 -2.7 457,898 + Pf1N1B4_389 0.76 -2.1 457,898 + Pf1N1B4_389 0.76 -1.1 457,898 + Pf1N1B4_389 0.76 +0.3 457,898 + Pf1N1B4_389 0.76 -1.1 457,898 + Pf1N1B4_389 0.76 -1.8 457,899 - Pf1N1B4_389 0.77 -0.1 457,899 - Pf1N1B4_389 0.77 -1.8 457,899 - Pf1N1B4_389 0.77 -0.3 457,899 - Pf1N1B4_389 0.77 -2.2 457,899 - Pf1N1B4_389 0.77 -1.1 457,899 - Pf1N1B4_389 0.77 -1.4 457,899 - Pf1N1B4_389 0.77 -1.7 457,975 + -1.1 457,975 + -2.4 457,976 - -1.5 457,976 - -2.1 457,982 + -1.2 457,983 - -2.2 457,992 + -1.2 458,113 + Pf1N1B4_390 0.15 -2.2 458,155 + Pf1N1B4_390 0.20 +0.3 458,257 - Pf1N1B4_390 0.32 -0.1 458,375 + Pf1N1B4_390 0.46 +0.9 458,375 + Pf1N1B4_390 0.46 -0.4 458,433 + Pf1N1B4_390 0.53 +2.3 458,441 + Pf1N1B4_390 0.54 +0.0 458,469 + Pf1N1B4_390 0.57 +0.8 458,499 + Pf1N1B4_390 0.61 -0.0 458,499 + -1.1 458,499 + Pf1N1B4_390 0.61 +1.7 458,499 + Pf1N1B4_390 0.61 +0.6 458,500 - Pf1N1B4_390 0.61 +0.4 458,500 - Pf1N1B4_390 0.61 -1.4 458,601 + Pf1N1B4_390 0.73 -0.7 458,673 + Pf1N1B4_390 0.81 -1.4 458,673 + Pf1N1B4_390 0.81 +0.9 458,673 + Pf1N1B4_390 0.81 -0.1 458,673 + Pf1N1B4_390 0.81 +1.3 458,673 + Pf1N1B4_390 0.81 +0.6 458,673 + Pf1N1B4_390 0.81 +0.7 458,673 + Pf1N1B4_390 0.81 +0.5 458,673 + Pf1N1B4_390 0.81 +0.9 458,673 + Pf1N1B4_390 0.81 -0.7 458,674 - Pf1N1B4_390 0.82 +0.1 458,674 - Pf1N1B4_390 0.82 -1.4 458,704 - Pf1N1B4_390 0.85 +1.4 458,795 + -0.1 458,840 + +0.3 458,840 + +1.4 458,841 - +0.2 458,841 - +0.9 458,850 + -0.5 458,872 + +0.9 458,872 + +0.9 458,915 + -1.6 458,915 + -0.1 458,915 + -0.9 458,916 - -0.5 458,916 - +0.3 458,916 - -1.4 458,916 - +0.7 458,916 - -1.2 458,916 - +1.2 458,916 - +0.6 458,917 + -0.1 458,917 + +0.9 458,917 + -0.9 458,917 + -0.1 458,917 + +0.9 458,917 + +1.8 458,917 + +1.5 458,917 + +1.1 458,917 + -0.1 458,917 + -0.4 458,917 + +1.6 458,917 + +0.3 458,918 - -0.1 458,918 - -0.4 458,918 - +0.5 458,918 - +0.5 458,935 + +0.6
Or see this region's nucleotide sequence