Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3361

Experiment: Rifampicin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.004 mg/ml
3,745,920	+				-0.5
3,745,920	+				-3.1
3,745,921	-				+0.1
3,745,921	-				-1.0
3,745,921	-				-0.0
3,745,990	-		Pf1N1B4_3360	0.15	-0.5
3,746,078	+		Pf1N1B4_3360	0.31	+1.1
3,746,078	+		Pf1N1B4_3360	0.31	+0.3
3,746,078	+		Pf1N1B4_3360	0.31	-0.6
3,746,078	+		Pf1N1B4_3360	0.31	+0.1
3,746,079	-		Pf1N1B4_3360	0.31	-0.1
3,746,211	+		Pf1N1B4_3360	0.56	-0.0
3,746,211	+		Pf1N1B4_3360	0.56	-1.4
3,746,211	+		Pf1N1B4_3360	0.56	+1.5
3,746,211	+		Pf1N1B4_3360	0.56	-0.9
3,746,211	+		Pf1N1B4_3360	0.56	+0.7
3,746,212	-		Pf1N1B4_3360	0.56	+0.5
3,746,277	+		Pf1N1B4_3360	0.68	-0.6
3,746,277	+		Pf1N1B4_3360	0.68	-0.3
3,746,448	+				+1.4
3,746,501	+				+2.5
3,746,534	+				+0.3
3,746,534	+				+1.8
3,746,534	+				-0.6
3,746,535	-				-0.0
3,746,535	-				+2.0
3,746,578	-				+0.1
3,746,668	-				+2.0
3,746,689	-				-0.9
3,746,689	-				-1.0
3,746,689	-				-2.0
3,746,689	-				+0.6
3,746,749	+				+0.1
3,746,749	+				-1.0
3,746,750	-				-1.9
3,746,750	-				-1.0
3,746,750	-				-0.4
3,746,750	-				-0.5
3,746,750	-				-1.9
3,746,752	-				+1.7
3,746,796	+		Pf1N1B4_3361	0.10	-2.5
3,746,832	+		Pf1N1B4_3361	0.12	-1.7
3,746,833	-		Pf1N1B4_3361	0.12	-1.0
3,746,847	+		Pf1N1B4_3361	0.13	-1.9
3,746,943	+		Pf1N1B4_3361	0.17	-0.0
3,746,943	+		Pf1N1B4_3361	0.17	-3.6
3,746,943	+		Pf1N1B4_3361	0.17	+0.6
3,746,944	-		Pf1N1B4_3361	0.17	-1.6
3,746,944	-				-0.0
3,746,944	-		Pf1N1B4_3361	0.17	-1.4
3,746,944	-		Pf1N1B4_3361	0.17	-3.9
3,746,944	-				-0.0
3,746,944	-		Pf1N1B4_3361	0.17	+2.5
3,747,055	-		Pf1N1B4_3361	0.23	-2.5
3,747,055	-		Pf1N1B4_3361	0.23	-1.4
3,747,055	-		Pf1N1B4_3361	0.23	-0.2
3,747,084	+		Pf1N1B4_3361	0.24	-0.4
3,747,084	+		Pf1N1B4_3361	0.24	-0.2
3,747,244	-		Pf1N1B4_3361	0.32	-0.6
3,747,244	-		Pf1N1B4_3361	0.32	-0.9
3,747,297	+		Pf1N1B4_3361	0.34	-0.3
3,747,297	+		Pf1N1B4_3361	0.34	-2.2
3,747,298	-		Pf1N1B4_3361	0.34	-0.6
3,747,312	+		Pf1N1B4_3361	0.35	-2.0
3,747,313	-		Pf1N1B4_3361	0.35	-1.9
3,747,370	-		Pf1N1B4_3361	0.38	-1.0
3,747,504	+		Pf1N1B4_3361	0.44	-1.6
3,747,504	+		Pf1N1B4_3361	0.44	-1.0
3,747,525	+		Pf1N1B4_3361	0.45	-1.0
3,747,525	+		Pf1N1B4_3361	0.45	-0.0
3,747,525	+		Pf1N1B4_3361	0.45	-1.0
3,747,526	-		Pf1N1B4_3361	0.45	-3.5
3,747,582	+				+1.5
3,747,582	+		Pf1N1B4_3361	0.48	-0.6
3,747,583	-		Pf1N1B4_3361	0.48	-2.2
3,747,747	+		Pf1N1B4_3361	0.55	-0.0
3,747,748	-		Pf1N1B4_3361	0.55	-1.1
3,747,748	-		Pf1N1B4_3361	0.55	-2.4
3,747,774	+		Pf1N1B4_3361	0.57	+1.0
3,747,774	+		Pf1N1B4_3361	0.57	-1.0
3,747,775	-		Pf1N1B4_3361	0.57	-1.6
3,747,775	-		Pf1N1B4_3361	0.57	-1.6
3,747,792	+		Pf1N1B4_3361	0.58	-1.3
3,747,792	+				+1.0
3,747,793	-		Pf1N1B4_3361	0.58	-0.0
3,747,820	+		Pf1N1B4_3361	0.59	-0.2
3,747,822	+		Pf1N1B4_3361	0.59	-1.4
3,747,822	+		Pf1N1B4_3361	0.59	-0.6
3,747,915	+		Pf1N1B4_3361	0.63	-1.1
3,747,916	-		Pf1N1B4_3361	0.63	-2.2
3,747,916	-		Pf1N1B4_3361	0.63	-0.8
3,747,916	-		Pf1N1B4_3361	0.63	-1.1
3,747,916	-		Pf1N1B4_3361	0.63	-2.4
3,747,984	+		Pf1N1B4_3361	0.67	-1.0
3,747,984	+		Pf1N1B4_3361	0.67	-0.3
3,747,984	+				-1.4
3,747,984	+		Pf1N1B4_3361	0.67	-2.0
3,747,984	+		Pf1N1B4_3361	0.67	+1.4
3,747,984	+		Pf1N1B4_3361	0.67	-2.2
3,747,984	+		Pf1N1B4_3361	0.67	-2.4
3,747,985	-		Pf1N1B4_3361	0.67	-0.0
3,748,050	+		Pf1N1B4_3361	0.70	-2.6
3,748,086	+		Pf1N1B4_3361	0.71	+0.4
3,748,087	-		Pf1N1B4_3361	0.72	+1.0
3,748,087	-		Pf1N1B4_3361	0.72	-2.1
3,748,087	-		Pf1N1B4_3361	0.72	+2.0
3,748,191	+		Pf1N1B4_3361	0.76	-2.4
3,748,192	-				-1.0
3,748,192	-		Pf1N1B4_3361	0.77	-1.6
3,748,192	-		Pf1N1B4_3361	0.77	-1.6
3,748,192	-		Pf1N1B4_3361	0.77	-1.4
3,748,192	-				+0.4
3,748,192	-				-0.0
3,748,192	-		Pf1N1B4_3361	0.77	-2.2
3,748,213	+		Pf1N1B4_3361	0.78	-1.0
3,748,214	-		Pf1N1B4_3361	0.78	-0.5
3,748,260	+		Pf1N1B4_3361	0.80	-0.3
3,748,260	+		Pf1N1B4_3361	0.80	+0.2
3,748,260	+		Pf1N1B4_3361	0.80	-0.6
3,748,332	+		Pf1N1B4_3361	0.83	-1.4
3,748,332	+		Pf1N1B4_3361	0.83	-0.1
3,748,333	-		Pf1N1B4_3361	0.83	+0.1
3,748,358	+		Pf1N1B4_3361	0.84	-1.0
3,748,702	+				-1.4
3,748,702	+				-1.4
3,748,703	-				-1.9
3,748,711	+				+0.5
3,748,711	+				-2.2
3,748,712	-				+1.8
3,748,712	-				+1.0
3,748,792	+				-2.6
3,748,792	+				-1.4
3,748,792	+				-1.6
3,748,792	+				-2.4
3,748,793	-				-1.9
3,748,793	-				+0.4
3,748,793	-				-2.9
3,749,218	+				-0.6
3,749,219	-		Pf1N1B4_3362	0.43	-0.5
3,749,219	-		Pf1N1B4_3362	0.43	-1.6
3,749,343	-		Pf1N1B4_3362	0.53	-2.0
3,749,545	+		Pf1N1B4_3362	0.70	-2.0
3,749,546	-		Pf1N1B4_3362	0.70	-1.6
3,749,546	-		Pf1N1B4_3362	0.70	-1.6
3,749,685	-		Pf1N1B4_3362	0.81	-1.4