Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3345

Experiment: Rifampicin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.004 mg/ml
3,732,393	+				-0.5
3,732,394	-				-0.0
3,732,394	-				+0.2
3,732,677	+				-0.0
3,732,678	-				-1.2
3,732,733	+		Pf1N1B4_3344	0.16	-1.0
3,732,733	+		Pf1N1B4_3344	0.16	-2.9
3,733,176	+				-1.4
3,733,177	-				-1.0
3,733,177	-				-3.0
3,733,177	-				-0.5
3,733,177	-				-2.4
3,733,177	-				-1.6
3,733,198	-				-0.0
3,733,198	-				-0.6
3,733,198	-				-0.6
3,733,198	-				-0.2
3,733,216	+				-0.6
3,733,216	+				+3.3
3,733,217	-				+0.3
3,733,217	-				+0.6
3,733,217	-				+1.3
3,733,217	-				+0.4
3,733,237	-				-0.0
3,733,237	-				+0.1
3,733,237	-				+1.5
3,733,237	-				+0.5
3,733,289	-				-1.0
3,733,289	-				-1.6
3,733,290	+				-2.0
3,733,290	+				+0.7
3,733,290	+				+0.5
3,733,291	-				+0.1
3,733,291	-				+0.6
3,733,291	-				-0.0
3,733,291	-				-0.6
3,733,291	-				+1.5
3,733,291	-				-1.5
3,733,291	-				+1.4
3,733,291	-				+1.7
3,733,291	-				-0.0
3,733,291	-				+0.1
3,733,291	-				+0.7
3,733,291	-				-2.4
3,733,291	-				+1.0
3,733,291	-				-0.0
3,733,291	-				-0.3
3,733,292	+				+2.3
3,733,292	+				-1.0
3,733,292	+				-0.4
3,733,292	+				+0.4
3,733,292	+				-2.9
3,733,292	+				+0.7
3,733,292	+				-1.0
3,733,293	-				+0.2
3,733,293	-				-1.9
3,733,293	-				+0.3
3,733,293	-				+0.5
3,733,293	-				-0.8
3,733,293	-				+0.4
3,733,293	-				-0.6
3,733,293	-				-0.2
3,733,293	-				-1.7
3,733,293	-				-0.6
3,733,293	-				-2.0
3,733,293	-				+0.1
3,733,293	-				-1.2
3,733,293	-				+0.4
3,733,293	-				-0.8
3,733,293	-				+0.4
3,733,293	-				-2.6
3,733,293	-				-1.2
3,733,293	-				-0.0
3,733,293	-				-0.7
3,733,335	-				-2.5
3,733,441	-		Pf1N1B4_3345	0.10	-1.4
3,733,441	-		Pf1N1B4_3345	0.10	+1.0
3,733,477	+		Pf1N1B4_3345	0.14	+0.3
3,733,485	+		Pf1N1B4_3345	0.14	-1.0
3,733,486	-		Pf1N1B4_3345	0.14	-2.1
3,733,594	+		Pf1N1B4_3345	0.24	+0.4
3,733,594	+		Pf1N1B4_3345	0.24	-0.9
3,733,595	-		Pf1N1B4_3345	0.24	-2.5
3,733,595	-		Pf1N1B4_3345	0.24	-0.5
3,733,653	+		Pf1N1B4_3345	0.29	-0.6
3,733,654	-		Pf1N1B4_3345	0.29	-2.5
3,733,681	-		Pf1N1B4_3345	0.32	+1.6
3,733,779	+		Pf1N1B4_3345	0.40	-1.0
3,733,819	+		Pf1N1B4_3345	0.44	-1.5
3,733,847	+		Pf1N1B4_3345	0.46	-1.6
3,733,847	+				+2.0
3,733,847	+		Pf1N1B4_3345	0.46	-0.2
3,733,847	+		Pf1N1B4_3345	0.46	-0.2
3,733,847	+		Pf1N1B4_3345	0.46	-2.9
3,733,848	-		Pf1N1B4_3345	0.46	-1.2
3,733,848	-		Pf1N1B4_3345	0.46	-1.6
3,733,851	+		Pf1N1B4_3345	0.47	-0.7
3,733,851	+		Pf1N1B4_3345	0.47	-1.0
3,733,851	+		Pf1N1B4_3345	0.47	-0.3
3,733,851	+		Pf1N1B4_3345	0.47	-1.6
3,733,851	+		Pf1N1B4_3345	0.47	-1.6
3,733,851	+				-1.4
3,733,851	+		Pf1N1B4_3345	0.47	-0.8
3,733,851	+		Pf1N1B4_3345	0.47	-1.0
3,733,851	+		Pf1N1B4_3345	0.47	+1.0
3,733,851	+		Pf1N1B4_3345	0.47	-1.4
3,733,851	+		Pf1N1B4_3345	0.47	-0.9
3,733,851	+				-0.0
3,733,852	-		Pf1N1B4_3345	0.47	-1.3
3,733,852	-		Pf1N1B4_3345	0.47	+0.5
3,733,852	-		Pf1N1B4_3345	0.47	-1.4
3,733,852	-		Pf1N1B4_3345	0.47	-2.9
3,733,852	-		Pf1N1B4_3345	0.47	-2.2
3,733,852	-		Pf1N1B4_3345	0.47	-2.0
3,733,852	-		Pf1N1B4_3345	0.47	-2.0
3,733,915	-		Pf1N1B4_3345	0.52	-1.0
3,733,915	-		Pf1N1B4_3345	0.52	-0.2
3,733,923	+		Pf1N1B4_3345	0.53	-0.2
3,733,924	-		Pf1N1B4_3345	0.53	-2.4
3,733,973	-		Pf1N1B4_3345	0.57	-3.1
3,734,107	+		Pf1N1B4_3345	0.69	-0.4
3,734,107	+		Pf1N1B4_3345	0.69	-0.5
3,734,107	+		Pf1N1B4_3345	0.69	-1.0
3,734,107	+		Pf1N1B4_3345	0.69	-2.4
3,734,108	-		Pf1N1B4_3345	0.69	+1.4
3,734,108	-		Pf1N1B4_3345	0.69	-3.2
3,734,108	-		Pf1N1B4_3345	0.69	-0.9
3,734,108	-		Pf1N1B4_3345	0.69	-2.6
3,734,108	-		Pf1N1B4_3345	0.69	-1.3
3,734,462	-				+1.0
3,734,462	-				-2.0
3,734,462	-				+1.0
3,734,462	-				+2.5
3,734,462	-				+1.1
3,734,475	-				-1.6
3,734,475	-				-0.0
3,734,475	-				+1.0
3,734,502	-		Pf1N1B4_3346	0.17	+0.7
3,734,502	-		Pf1N1B4_3346	0.17	+0.8
3,734,502	-		Pf1N1B4_3346	0.17	+0.0
3,734,502	-		Pf1N1B4_3346	0.17	+0.7
3,734,502	-		Pf1N1B4_3346	0.17	-1.4
3,734,502	-		Pf1N1B4_3346	0.17	+1.0
3,734,507	+		Pf1N1B4_3346	0.18	+0.4
3,734,507	+		Pf1N1B4_3346	0.18	-1.9
3,734,507	+		Pf1N1B4_3346	0.18	-1.6
3,734,508	-		Pf1N1B4_3346	0.19	-1.0
3,734,508	-		Pf1N1B4_3346	0.19	+1.2
3,734,508	-		Pf1N1B4_3346	0.19	-0.6
3,734,508	-		Pf1N1B4_3346	0.19	-0.5
3,734,508	-		Pf1N1B4_3346	0.19	-3.7
3,734,508	-		Pf1N1B4_3346	0.19	-0.6
3,734,508	-		Pf1N1B4_3346	0.19	-0.0
3,734,508	-		Pf1N1B4_3346	0.19	-1.0
3,734,508	-		Pf1N1B4_3346	0.19	+1.5
3,734,508	-		Pf1N1B4_3346	0.19	-0.2
3,734,508	-		Pf1N1B4_3346	0.19	-1.4
3,734,697	-		Pf1N1B4_3346	0.83	-0.9
3,734,697	-		Pf1N1B4_3346	0.83	+0.8
3,734,745	-				-0.3
3,734,822	+				-0.9
3,734,903	+				-0.9
3,734,903	+				+0.4
3,734,904	-				-0.6
3,734,904	-				+1.0
3,734,943	+				-0.4
3,735,164	+		Pf1N1B4_3347	0.32	-1.5
3,735,164	+		Pf1N1B4_3347	0.32	+2.0
3,735,164	+		Pf1N1B4_3347	0.32	-1.5
3,735,164	+				-0.0
3,735,165	-		Pf1N1B4_3347	0.32	+1.3
3,735,165	-		Pf1N1B4_3347	0.32	-1.9
3,735,168	+		Pf1N1B4_3347	0.32	-0.0
3,735,168	+		Pf1N1B4_3347	0.32	-0.0
3,735,169	-				-0.0
3,735,169	-		Pf1N1B4_3347	0.32	+2.4
3,735,176	+				-1.0
3,735,176	+		Pf1N1B4_3347	0.33	+1.1
3,735,176	+		Pf1N1B4_3347	0.33	+1.0
3,735,176	+		Pf1N1B4_3347	0.33	-1.6
3,735,176	+		Pf1N1B4_3347	0.33	-0.8
3,735,176	+		Pf1N1B4_3347	0.33	+1.2
3,735,176	+		Pf1N1B4_3347	0.33	-2.6
3,735,176	+		Pf1N1B4_3347	0.33	-0.3
3,735,176	+		Pf1N1B4_3347	0.33	-0.9
3,735,176	+		Pf1N1B4_3347	0.33	+1.5
3,735,176	+		Pf1N1B4_3347	0.33	+2.3
3,735,177	-		Pf1N1B4_3347	0.33	-0.4
3,735,177	-		Pf1N1B4_3347	0.33	+0.6
3,735,177	-				+1.0
3,735,177	-		Pf1N1B4_3347	0.33	+0.3
3,735,177	-		Pf1N1B4_3347	0.33	+1.5
3,735,177	-		Pf1N1B4_3347	0.33	-0.5
3,735,177	-		Pf1N1B4_3347	0.33	+1.8
3,735,177	-		Pf1N1B4_3347	0.33	+2.5
3,735,177	-		Pf1N1B4_3347	0.33	+1.3
3,735,177	-				+1.0
3,735,177	-		Pf1N1B4_3347	0.33	+0.4
3,735,177	-		Pf1N1B4_3347	0.33	+0.4
3,735,177	-		Pf1N1B4_3347	0.33	-0.0
3,735,183	+		Pf1N1B4_3347	0.34	+0.9
3,735,184	-		Pf1N1B4_3347	0.34	-0.6
3,735,348	-		Pf1N1B4_3347	0.52	-1.0
3,735,437	+		Pf1N1B4_3347	0.61	+1.2
3,735,437	+		Pf1N1B4_3347	0.61	+1.0
3,735,438	-		Pf1N1B4_3347	0.61	-1.4
3,735,438	-		Pf1N1B4_3347	0.61	-0.5