Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3158

Experiment: Rifampicin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.004 mg/ml
3,535,168	+				+2.6
3,535,168	+		Pf1N1B4_3156	0.71	+0.2
3,535,168	+				-0.6
3,535,168	+		Pf1N1B4_3156	0.71	-0.0
3,535,168	+		Pf1N1B4_3156	0.71	+0.8
3,535,169	-		Pf1N1B4_3156	0.71	+0.2
3,535,169	-				-0.6
3,535,169	-		Pf1N1B4_3156	0.71	-0.3
3,535,207	+		Pf1N1B4_3156	0.76	+1.7
3,535,207	+		Pf1N1B4_3156	0.76	-0.1
3,535,283	+				-1.3
3,535,283	+		Pf1N1B4_3156	0.86	+0.6
3,535,283	+		Pf1N1B4_3156	0.86	-0.8
3,535,283	+				+0.6
3,535,283	+		Pf1N1B4_3156	0.86	-0.0
3,535,283	+		Pf1N1B4_3156	0.86	-2.6
3,535,283	+		Pf1N1B4_3156	0.86	+1.7
3,535,283	+		Pf1N1B4_3156	0.86	+0.6
3,535,283	+		Pf1N1B4_3156	0.86	+0.6
3,535,283	+		Pf1N1B4_3156	0.86	+0.2
3,535,283	+		Pf1N1B4_3156	0.86	+0.3
3,535,284	-		Pf1N1B4_3156	0.86	-0.4
3,535,284	-		Pf1N1B4_3156	0.86	+0.2
3,535,284	-		Pf1N1B4_3156	0.86	+0.7
3,535,284	-		Pf1N1B4_3156	0.86	+0.0
3,535,284	-		Pf1N1B4_3156	0.86	-0.0
3,535,307	+		Pf1N1B4_3156	0.89	-2.3
3,535,307	+		Pf1N1B4_3156	0.89	+1.8
3,535,307	+		Pf1N1B4_3156	0.89	+1.6
3,535,307	+				-1.0
3,535,307	+		Pf1N1B4_3156	0.89	-0.2
3,535,308	-		Pf1N1B4_3156	0.89	+0.9
3,535,308	-				-0.0
3,535,308	-		Pf1N1B4_3156	0.89	+1.6
3,535,308	-		Pf1N1B4_3156	0.89	-0.5
3,535,308	-		Pf1N1B4_3156	0.89	-1.3
3,535,308	-		Pf1N1B4_3156	0.89	-1.1
3,535,308	-		Pf1N1B4_3156	0.89	+0.2
3,535,393	-				+0.4
3,535,420	+				-0.5
3,535,422	-				-1.0
3,535,422	-				+0.7
3,535,422	-				-0.0
3,535,428	+				-0.8
3,535,428	+				-1.0
3,535,493	+				-1.8
3,535,494	-				-1.6
3,535,494	-				-0.6
3,535,507	+				+0.8
3,535,507	+				-1.5
3,535,507	+				-0.0
3,535,514	+				+0.2
3,535,514	+				+0.2
3,535,514	+				+1.6
3,535,514	+				-1.2
3,535,514	+				-0.5
3,535,515	-				-1.8
3,535,515	-				-0.0
3,535,515	-				-0.6
3,535,515	-				-2.2
3,535,521	+				-1.6
3,535,521	+				-2.0
3,535,521	+				+1.3
3,535,521	+				+1.1
3,535,521	+				+2.1
3,535,521	+				-2.6
3,535,522	-				-0.6
3,535,562	-				+0.5
3,535,628	-		Pf1N1B4_3157	0.15	-0.6
3,535,909	+		Pf1N1B4_3157	0.75	+0.5
3,535,910	-		Pf1N1B4_3157	0.75	+2.1
3,535,993	+				-0.0
3,535,993	+				-0.9
3,536,010	+				-1.0
3,536,011	-				-2.5
3,536,011	-				-1.0
3,536,044	-				+1.0
3,536,064	+				-1.0
3,536,065	-				-1.7
3,536,085	-				+0.3
3,536,085	-				-2.0
3,536,085	-				-1.7
3,536,085	-				-0.2
3,536,085	-				-0.9
3,536,085	-				-0.7
3,536,085	-				-0.8
3,536,104	+				+0.3
3,536,104	+				-0.8
3,536,105	-				-0.8
3,536,105	-				-1.6
3,536,105	-				-1.0
3,536,105	-				-1.6
3,536,320	+		Pf1N1B4_3158	0.25	-2.9
3,536,321	-		Pf1N1B4_3158	0.25	-0.8
3,536,321	-		Pf1N1B4_3158	0.25	-1.6
3,536,321	-		Pf1N1B4_3158	0.25	-0.7
3,536,321	-		Pf1N1B4_3158	0.25	-1.3
3,536,321	-		Pf1N1B4_3158	0.25	-1.0
3,536,321	-		Pf1N1B4_3158	0.25	-2.5
3,536,386	+		Pf1N1B4_3158	0.32	-0.3
3,536,386	+		Pf1N1B4_3158	0.32	+1.7
3,536,386	+		Pf1N1B4_3158	0.32	+0.1
3,536,386	+		Pf1N1B4_3158	0.32	-1.8
3,536,386	+		Pf1N1B4_3158	0.32	+0.8
3,536,386	+		Pf1N1B4_3158	0.32	+2.4
3,536,386	+		Pf1N1B4_3158	0.32	+0.4
3,536,387	-		Pf1N1B4_3158	0.32	+0.1
3,536,387	-		Pf1N1B4_3158	0.32	-1.8
3,536,387	-		Pf1N1B4_3158	0.32	-0.2
3,536,387	-		Pf1N1B4_3158	0.32	+0.5
3,536,387	-		Pf1N1B4_3158	0.32	+0.1
3,536,847	+		Pf1N1B4_3158	0.84	+0.5
3,536,847	+		Pf1N1B4_3158	0.84	+1.5
3,536,847	+				-0.6
3,536,847	+		Pf1N1B4_3158	0.84	+1.1
3,536,848	-		Pf1N1B4_3158	0.84	-1.3
3,536,848	-		Pf1N1B4_3158	0.84	-2.0
3,536,929	-				+1.0
3,536,942	+				+0.2
3,536,943	-				-1.5
3,536,943	-				-1.3
3,536,943	-				-1.6
3,536,943	-				-1.3
3,536,943	-				+0.6
3,536,964	-				-2.3
3,536,964	-				-0.0
3,537,040	-				-1.8
3,537,062	-		Pf1N1B4_3159	0.12	-2.5
3,537,121	+		Pf1N1B4_3159	0.24	-1.6
3,537,121	+		Pf1N1B4_3159	0.24	+0.6
3,537,121	+		Pf1N1B4_3159	0.24	+1.0
3,537,121	+		Pf1N1B4_3159	0.24	+0.5
3,537,122	-		Pf1N1B4_3159	0.24	-2.3
3,537,122	-		Pf1N1B4_3159	0.24	-0.2
3,537,122	-		Pf1N1B4_3159	0.24	-1.3
3,537,122	-		Pf1N1B4_3159	0.24	+0.7
3,537,309	-		Pf1N1B4_3159	0.64	+0.4
3,537,370	+		Pf1N1B4_3159	0.77	+0.5
3,537,370	+		Pf1N1B4_3159	0.77	+0.5
3,537,370	+		Pf1N1B4_3159	0.77	-0.5
3,537,370	+				-1.3
3,537,370	+		Pf1N1B4_3159	0.77	-0.3
3,537,370	+		Pf1N1B4_3159	0.77	-0.0
3,537,371	-				-0.0
3,537,371	-		Pf1N1B4_3159	0.77	+0.7
3,537,371	-		Pf1N1B4_3159	0.77	-2.7
3,537,371	-		Pf1N1B4_3159	0.77	-1.2
3,537,371	-		Pf1N1B4_3159	0.77	-0.2
3,537,371	-		Pf1N1B4_3159	0.77	+1.3
3,537,371	-		Pf1N1B4_3159	0.77	-0.6
3,537,371	-		Pf1N1B4_3159	0.77	-0.0
3,537,371	-		Pf1N1B4_3159	0.77	+0.7
3,537,371	-		Pf1N1B4_3159	0.77	-0.6
3,537,436	+				-0.6
3,537,437	-				+0.5
3,537,526	-				+1.4
3,537,531	+				+1.0
3,537,531	+				-0.3
3,537,531	+				+0.8
3,537,532	-				-1.7
3,537,532	-				-0.6
3,537,572	+				+0.2
3,537,585	+				-0.4
3,537,586	-				-1.3
3,537,586	-				-0.4
3,537,586	-				-1.0
3,537,610	-				+0.8
3,537,961	-		Pf1N1B4_3160	0.28	+0.6
3,537,961	-		Pf1N1B4_3160	0.28	+1.0