Experiment: Rifampicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_303 and Pf1N1B4_304 are separated by 234 nucleotides Pf1N1B4_304 and Pf1N1B4_305 are separated by 207 nucleotides
Pf1N1B4_303 - Transglycosylase, Slt family, at 356,094 to 357,515
_303
Pf1N1B4_304 - Deoxyribonuclease TatD, at 357,750 to 358,559
_304
Pf1N1B4_305 - Methyl-accepting chemotaxis protein, at 358,767 to 360,248
_305
Position (kb) 357
358
359 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 356.773 kb on + strand, within Pf1N1B4_303 at 356.773 kb on + strand, within Pf1N1B4_303 at 357.061 kb on + strand, within Pf1N1B4_303 at 357.125 kb on + strand at 357.156 kb on + strand, within Pf1N1B4_303 at 357.156 kb on + strand, within Pf1N1B4_303 at 357.156 kb on + strand, within Pf1N1B4_303 at 357.156 kb on + strand, within Pf1N1B4_303 at 357.156 kb on + strand, within Pf1N1B4_303 at 357.156 kb on + strand, within Pf1N1B4_303 at 357.157 kb on - strand, within Pf1N1B4_303 at 357.157 kb on - strand, within Pf1N1B4_303 at 357.157 kb on - strand, within Pf1N1B4_303 at 357.157 kb on - strand, within Pf1N1B4_303 at 357.157 kb on - strand, within Pf1N1B4_303 at 357.277 kb on + strand, within Pf1N1B4_303 at 357.277 kb on + strand, within Pf1N1B4_303 at 357.277 kb on + strand, within Pf1N1B4_303 at 357.277 kb on + strand, within Pf1N1B4_303 at 357.277 kb on + strand, within Pf1N1B4_303 at 357.277 kb on + strand, within Pf1N1B4_303 at 357.277 kb on + strand, within Pf1N1B4_303 at 357.277 kb on + strand, within Pf1N1B4_303 at 357.278 kb on - strand at 357.304 kb on + strand, within Pf1N1B4_303 at 357.598 kb on + strand at 357.671 kb on + strand at 357.681 kb on + strand at 357.681 kb on + strand at 357.681 kb on + strand at 357.698 kb on + strand at 357.700 kb on + strand at 357.700 kb on + strand at 357.706 kb on + strand at 357.717 kb on + strand at 357.718 kb on - strand at 357.743 kb on + strand at 357.744 kb on - strand at 357.744 kb on - strand at 357.744 kb on - strand at 357.828 kb on + strand at 357.829 kb on - strand at 358.347 kb on - strand, within Pf1N1B4_304 at 358.384 kb on - strand, within Pf1N1B4_304 at 358.384 kb on - strand, within Pf1N1B4_304 at 358.441 kb on - strand, within Pf1N1B4_304 at 358.533 kb on + strand at 358.534 kb on - strand at 358.561 kb on + strand at 358.561 kb on + strand at 358.561 kb on + strand at 358.561 kb on + strand at 358.561 kb on + strand at 358.561 kb on + strand at 358.561 kb on + strand at 358.562 kb on - strand at 358.562 kb on - strand at 358.562 kb on - strand at 358.562 kb on - strand at 358.562 kb on - strand at 358.603 kb on + strand at 358.604 kb on - strand at 358.629 kb on + strand at 358.629 kb on + strand at 358.630 kb on - strand at 358.630 kb on - strand at 358.688 kb on + strand at 358.688 kb on + strand at 358.781 kb on + strand at 358.782 kb on - strand at 358.800 kb on + strand at 358.801 kb on - strand at 358.857 kb on + strand at 358.858 kb on - strand at 359.107 kb on + strand, within Pf1N1B4_305 at 359.108 kb on - strand, within Pf1N1B4_305 at 359.492 kb on + strand, within Pf1N1B4_305 at 359.492 kb on + strand, within Pf1N1B4_305
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml remove 356,773 + Pf1N1B4_303 0.48 -2.2 356,773 + Pf1N1B4_303 0.48 +0.9 357,061 + Pf1N1B4_303 0.68 +0.3 357,125 + +0.9 357,156 + Pf1N1B4_303 0.75 -0.4 357,156 + Pf1N1B4_303 0.75 -0.7 357,156 + Pf1N1B4_303 0.75 -1.2 357,156 + Pf1N1B4_303 0.75 -0.1 357,156 + Pf1N1B4_303 0.75 +0.1 357,156 + Pf1N1B4_303 0.75 +2.2 357,157 - Pf1N1B4_303 0.75 -1.2 357,157 - Pf1N1B4_303 0.75 +0.5 357,157 - Pf1N1B4_303 0.75 -1.2 357,157 - Pf1N1B4_303 0.75 +2.5 357,157 - Pf1N1B4_303 0.75 -0.7 357,277 + Pf1N1B4_303 0.83 +0.9 357,277 + Pf1N1B4_303 0.83 -0.7 357,277 + Pf1N1B4_303 0.83 +0.0 357,277 + Pf1N1B4_303 0.83 +0.5 357,277 + Pf1N1B4_303 0.83 +0.4 357,277 + Pf1N1B4_303 0.83 +0.5 357,277 + Pf1N1B4_303 0.83 +0.2 357,277 + Pf1N1B4_303 0.83 -1.9 357,278 - -1.9 357,304 + Pf1N1B4_303 0.85 +1.3 357,598 + +0.9 357,671 + -0.0 357,681 + +0.7 357,681 + +0.5 357,681 + +0.5 357,698 + -1.1 357,700 + -0.1 357,700 + +1.9 357,706 + +0.7 357,717 + -0.3 357,718 - -0.9 357,743 + -0.9 357,744 - -0.7 357,744 - -0.4 357,744 - -0.3 357,828 + -0.4 357,829 - +0.2 358,347 - Pf1N1B4_304 0.74 -2.1 358,384 - Pf1N1B4_304 0.78 -1.9 358,384 - Pf1N1B4_304 0.78 -0.4 358,441 - Pf1N1B4_304 0.85 -1.7 358,533 + +0.3 358,534 - +0.7 358,561 + -0.3 358,561 + -0.3 358,561 + +2.9 358,561 + -0.7 358,561 + -1.1 358,561 + -0.7 358,561 + -0.0 358,562 - +0.7 358,562 - -0.5 358,562 - +1.7 358,562 - -0.2 358,562 - -1.7 358,603 + -0.7 358,604 - -0.9 358,629 + +2.5 358,629 + -2.7 358,630 - -1.7 358,630 - -0.7 358,688 + -0.9 358,688 + +0.1 358,781 + +0.9 358,782 - +0.3 358,800 + -0.1 358,801 - -2.1 358,857 + -0.1 358,858 - +0.3 359,107 + Pf1N1B4_305 0.23 -0.9 359,108 - Pf1N1B4_305 0.23 -0.1 359,492 + Pf1N1B4_305 0.49 +0.6 359,492 + Pf1N1B4_305 0.49 -0.8
Or see this region's nucleotide sequence