Experiment: Rifampicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2917 and Pf1N1B4_2918 are separated by 235 nucleotides Pf1N1B4_2918 and Pf1N1B4_2919 overlap by 4 nucleotides
Pf1N1B4_2917 - FIG140336: TPR domain protein, at 3,274,305 to 3,276,029
_2917
Pf1N1B4_2918 - Glutamyl-tRNA reductase (EC 1.2.1.70), at 3,276,265 to 3,277,554
_2918
Pf1N1B4_2919 - Peptide chain release factor 1, at 3,277,551 to 3,278,633
_2919
Position (kb)
3276
3277
3278 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.790 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.900 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.030 kb on - strand at 3276.030 kb on - strand at 3276.032 kb on - strand at 3276.032 kb on - strand at 3276.032 kb on - strand at 3276.090 kb on + strand at 3276.090 kb on + strand at 3276.090 kb on + strand at 3276.091 kb on - strand at 3276.190 kb on + strand at 3276.190 kb on + strand at 3276.190 kb on + strand at 3276.190 kb on + strand at 3276.191 kb on - strand at 3276.191 kb on - strand at 3276.191 kb on - strand at 3276.191 kb on - strand at 3276.434 kb on + strand, within Pf1N1B4_2918 at 3277.527 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml remove 3,275,612 - Pf1N1B4_2917 0.76 -1.7 3,275,612 - Pf1N1B4_2917 0.76 -2.8 3,275,612 - Pf1N1B4_2917 0.76 -2.1 3,275,612 - Pf1N1B4_2917 0.76 -1.3 3,275,612 - Pf1N1B4_2917 0.76 +0.1 3,275,612 - Pf1N1B4_2917 0.76 -3.3 3,275,612 - Pf1N1B4_2917 0.76 -3.6 3,275,612 - Pf1N1B4_2917 0.76 -1.7 3,275,612 - Pf1N1B4_2917 0.76 -1.3 3,275,612 - Pf1N1B4_2917 0.76 +0.1 3,275,612 - Pf1N1B4_2917 0.76 -0.3 3,275,612 - Pf1N1B4_2917 0.76 -0.9 3,275,612 - Pf1N1B4_2917 0.76 -2.0 3,275,790 - Pf1N1B4_2917 0.86 -1.9 3,275,810 - Pf1N1B4_2917 0.87 -0.2 3,275,810 - Pf1N1B4_2917 0.87 -0.9 3,275,810 - Pf1N1B4_2917 0.87 -0.4 3,275,810 - Pf1N1B4_2917 0.87 -1.5 3,275,810 - Pf1N1B4_2917 0.87 -3.3 3,275,810 - Pf1N1B4_2917 0.87 -0.7 3,275,810 - Pf1N1B4_2917 0.87 -1.3 3,275,810 - Pf1N1B4_2917 0.87 -2.5 3,275,810 - Pf1N1B4_2917 0.87 -0.3 3,275,810 - Pf1N1B4_2917 0.87 -1.3 3,275,810 - Pf1N1B4_2917 0.87 -0.4 3,275,810 - Pf1N1B4_2917 0.87 -2.5 3,275,810 - Pf1N1B4_2917 0.87 -1.4 3,275,810 - Pf1N1B4_2917 0.87 -1.9 3,275,810 - Pf1N1B4_2917 0.87 -1.5 3,275,810 - Pf1N1B4_2917 0.87 -0.9 3,275,810 - Pf1N1B4_2917 0.87 -1.3 3,275,900 - -2.4 3,276,024 - -1.5 3,276,024 - -2.3 3,276,024 - +1.1 3,276,024 - -2.9 3,276,024 - -1.5 3,276,024 - -1.3 3,276,024 - -2.8 3,276,024 - -2.3 3,276,024 - -0.9 3,276,024 - +0.6 3,276,024 - -0.2 3,276,024 - -2.5 3,276,024 - +0.1 3,276,024 - -1.9 3,276,024 - -0.5 3,276,024 - -1.5 3,276,024 - +0.1 3,276,024 - +0.1 3,276,024 - -3.0 3,276,024 - -1.9 3,276,024 - -1.9 3,276,024 - -0.8 3,276,024 - -1.7 3,276,024 - -1.3 3,276,024 - +1.1 3,276,024 - -3.0 3,276,024 - -2.6 3,276,024 - -2.3 3,276,024 - -2.1 3,276,024 - -0.9 3,276,030 - -2.9 3,276,030 - -1.5 3,276,032 - -1.3 3,276,032 - +0.5 3,276,032 - +0.8 3,276,090 + -0.5 3,276,090 + +0.1 3,276,090 + -1.3 3,276,091 - +0.5 3,276,190 + +0.1 3,276,190 + +0.1 3,276,190 + -0.9 3,276,190 + +1.3 3,276,191 - -0.9 3,276,191 - -0.3 3,276,191 - -0.5 3,276,191 - +0.3 3,276,434 + Pf1N1B4_2918 0.13 +1.3 3,277,527 + -1.8
Or see this region's nucleotide sequence