Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2918

Experiment: Rifampicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2917 and Pf1N1B4_2918 are separated by 235 nucleotidesPf1N1B4_2918 and Pf1N1B4_2919 overlap by 4 nucleotides Pf1N1B4_2917 - FIG140336: TPR domain protein, at 3,274,305 to 3,276,029 _2917 Pf1N1B4_2918 - Glutamyl-tRNA reductase (EC 1.2.1.70), at 3,276,265 to 3,277,554 _2918 Pf1N1B4_2919 - Peptide chain release factor 1, at 3,277,551 to 3,278,633 _2919 Position (kb) 3276 3277 3278Strain fitness (log2 ratio) -3 -2 -1 0 1at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.790 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.900 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.030 kb on - strandat 3276.030 kb on - strandat 3276.032 kb on - strandat 3276.032 kb on - strandat 3276.032 kb on - strandat 3276.090 kb on + strandat 3276.090 kb on + strandat 3276.090 kb on + strandat 3276.091 kb on - strandat 3276.190 kb on + strandat 3276.190 kb on + strandat 3276.190 kb on + strandat 3276.190 kb on + strandat 3276.191 kb on - strandat 3276.191 kb on - strandat 3276.191 kb on - strandat 3276.191 kb on - strandat 3276.434 kb on + strand, within Pf1N1B4_2918at 3277.527 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml
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3,275,612 - Pf1N1B4_2917 0.76 -1.7
3,275,612 - Pf1N1B4_2917 0.76 -2.8
3,275,612 - Pf1N1B4_2917 0.76 -2.1
3,275,612 - Pf1N1B4_2917 0.76 -1.3
3,275,612 - Pf1N1B4_2917 0.76 +0.1
3,275,612 - Pf1N1B4_2917 0.76 -3.3
3,275,612 - Pf1N1B4_2917 0.76 -3.6
3,275,612 - Pf1N1B4_2917 0.76 -1.7
3,275,612 - Pf1N1B4_2917 0.76 -1.3
3,275,612 - Pf1N1B4_2917 0.76 +0.1
3,275,612 - Pf1N1B4_2917 0.76 -0.3
3,275,612 - Pf1N1B4_2917 0.76 -0.9
3,275,612 - Pf1N1B4_2917 0.76 -2.0
3,275,790 - Pf1N1B4_2917 0.86 -1.9
3,275,810 - Pf1N1B4_2917 0.87 -0.2
3,275,810 - Pf1N1B4_2917 0.87 -0.9
3,275,810 - Pf1N1B4_2917 0.87 -0.4
3,275,810 - Pf1N1B4_2917 0.87 -1.5
3,275,810 - Pf1N1B4_2917 0.87 -3.3
3,275,810 - Pf1N1B4_2917 0.87 -0.7
3,275,810 - Pf1N1B4_2917 0.87 -1.3
3,275,810 - Pf1N1B4_2917 0.87 -2.5
3,275,810 - Pf1N1B4_2917 0.87 -0.3
3,275,810 - Pf1N1B4_2917 0.87 -1.3
3,275,810 - Pf1N1B4_2917 0.87 -0.4
3,275,810 - Pf1N1B4_2917 0.87 -2.5
3,275,810 - Pf1N1B4_2917 0.87 -1.4
3,275,810 - Pf1N1B4_2917 0.87 -1.9
3,275,810 - Pf1N1B4_2917 0.87 -1.5
3,275,810 - Pf1N1B4_2917 0.87 -0.9
3,275,810 - Pf1N1B4_2917 0.87 -1.3
3,275,900 - -2.4
3,276,024 - -1.5
3,276,024 - -2.3
3,276,024 - +1.1
3,276,024 - -2.9
3,276,024 - -1.5
3,276,024 - -1.3
3,276,024 - -2.8
3,276,024 - -2.3
3,276,024 - -0.9
3,276,024 - +0.6
3,276,024 - -0.2
3,276,024 - -2.5
3,276,024 - +0.1
3,276,024 - -1.9
3,276,024 - -0.5
3,276,024 - -1.5
3,276,024 - +0.1
3,276,024 - +0.1
3,276,024 - -3.0
3,276,024 - -1.9
3,276,024 - -1.9
3,276,024 - -0.8
3,276,024 - -1.7
3,276,024 - -1.3
3,276,024 - +1.1
3,276,024 - -3.0
3,276,024 - -2.6
3,276,024 - -2.3
3,276,024 - -2.1
3,276,024 - -0.9
3,276,030 - -2.9
3,276,030 - -1.5
3,276,032 - -1.3
3,276,032 - +0.5
3,276,032 - +0.8
3,276,090 + -0.5
3,276,090 + +0.1
3,276,090 + -1.3
3,276,091 - +0.5
3,276,190 + +0.1
3,276,190 + +0.1
3,276,190 + -0.9
3,276,190 + +1.3
3,276,191 - -0.9
3,276,191 - -0.3
3,276,191 - -0.5
3,276,191 - +0.3
3,276,434 + Pf1N1B4_2918 0.13 +1.3
3,277,527 + -1.8

Or see this region's nucleotide sequence