Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1931

Experiment: Rifampicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1929 and Pf1N1B4_1930 are separated by 573 nucleotidesPf1N1B4_1930 and Pf1N1B4_1931 overlap by 20 nucleotidesPf1N1B4_1931 and Pf1N1B4_1932 are separated by 240 nucleotides Pf1N1B4_1929 - Chromosomal replication initiator protein DnaA, at 2,206,870 to 2,208,384 _1929 Pf1N1B4_1930 - LSU ribosomal protein L34p, at 2,208,958 to 2,209,092 _1930 Pf1N1B4_1931 - Ribonuclease P protein component (EC 3.1.26.5), at 2,209,073 to 2,209,510 _1931 Pf1N1B4_1932 - Inner membrane protein translocase component YidC, long form, at 2,209,751 to 2,211,439 _1932 Position (kb) 2209 2210Strain fitness (log2 ratio) -1 0 1 2at 2208.441 kb on - strandat 2208.460 kb on - strandat 2208.692 kb on + strandat 2208.791 kb on + strandat 2208.797 kb on + strandat 2208.799 kb on + strandat 2208.841 kb on + strandat 2208.841 kb on + strandat 2208.845 kb on + strandat 2208.845 kb on + strandat 2208.845 kb on + strandat 2208.847 kb on + strandat 2209.615 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml
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2,208,441 - -0.1
2,208,460 - -0.9
2,208,692 + -0.1
2,208,791 + +0.5
2,208,797 + +0.3
2,208,799 + +0.8
2,208,841 + -0.7
2,208,841 + -1.0
2,208,845 + +1.1
2,208,845 + +1.8
2,208,845 + +0.3
2,208,847 + +0.3
2,209,615 + -1.3

Or see this region's nucleotide sequence