Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1834

Experiment: Rifampicin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.004 mg/ml
2,109,089	+		Pf1N1B4_1832	0.49	+0.1
2,109,089	+		Pf1N1B4_1832	0.49	-1.7
2,109,090	-		Pf1N1B4_1832	0.49	+1.9
2,109,090	-		Pf1N1B4_1832	0.49	-0.5
2,109,127	+		Pf1N1B4_1832	0.53	-0.3
2,109,127	+		Pf1N1B4_1832	0.53	+0.3
2,109,128	-		Pf1N1B4_1832	0.53	-0.2
2,109,307	+		Pf1N1B4_1832	0.73	-0.3
2,109,307	+		Pf1N1B4_1832	0.73	-0.7
2,109,307	+		Pf1N1B4_1832	0.73	+0.2
2,109,307	+		Pf1N1B4_1832	0.73	+0.7
2,109,308	-		Pf1N1B4_1832	0.73	+1.1
2,109,308	-		Pf1N1B4_1832	0.73	-0.0
2,109,308	-		Pf1N1B4_1832	0.73	-1.7
2,109,308	-		Pf1N1B4_1832	0.73	+0.3
2,109,308	-		Pf1N1B4_1832	0.73	+0.1
2,109,308	-		Pf1N1B4_1832	0.73	-1.3
2,109,308	-		Pf1N1B4_1832	0.73	-0.7
2,109,308	-		Pf1N1B4_1832	0.73	-0.7
2,109,308	-		Pf1N1B4_1832	0.73	-1.7
2,109,332	-		Pf1N1B4_1832	0.76	-0.4
2,109,332	-				-0.3
2,109,332	-		Pf1N1B4_1832	0.76	-2.0
2,109,332	-		Pf1N1B4_1832	0.76	+0.3
2,109,334	+		Pf1N1B4_1832	0.76	+2.6
2,109,334	+		Pf1N1B4_1832	0.76	-0.4
2,109,334	+		Pf1N1B4_1832	0.76	-1.6
2,109,335	-		Pf1N1B4_1832	0.76	+0.8
2,109,519	+				-1.5
2,109,544	+				-1.9
2,109,544	+				+1.9
2,109,544	+				+0.9
2,109,544	+				+0.9
2,109,544	+				+0.4
2,109,544	+				+1.5
2,109,544	+				-0.0
2,109,544	+				+0.7
2,109,544	+				-0.3
2,109,544	+				-0.2
2,109,544	+				+1.7
2,109,544	+				+1.3
2,109,545	-				-0.4
2,109,545	-				+1.3
2,109,545	-				-1.3
2,109,545	-				+1.7
2,109,545	-				+1.0
2,109,545	-				+0.2
2,109,548	+				-0.7
2,109,548	+				-1.9
2,109,548	+				-0.0
2,109,568	+				-0.7
2,109,569	-				+0.6
2,109,634	+		Pf1N1B4_1833	0.28	-0.1
2,109,634	+		Pf1N1B4_1833	0.28	+2.3
2,109,635	-		Pf1N1B4_1833	0.28	+0.6
2,109,635	-		Pf1N1B4_1833	0.28	-0.0
2,109,635	-		Pf1N1B4_1833	0.28	+0.0
2,109,686	-		Pf1N1B4_1833	0.44	+0.5
2,109,686	-		Pf1N1B4_1833	0.44	+2.2
2,109,759	-		Pf1N1B4_1833	0.66	+1.5
2,109,848	+				-0.3
2,109,848	+				+0.2
2,109,848	+				-2.6
2,109,848	+				+0.5
2,109,849	-				-0.4
2,109,849	-				+0.4
2,109,849	-				-0.1
2,109,852	+				-0.7
2,109,853	-				+0.6
2,109,853	-				-1.3
2,109,937	+				-0.3
2,109,937	+				+0.2
2,109,937	+				+2.3
2,109,938	-				-0.0
2,109,938	-				-0.7
2,109,976	+				-2.5
2,109,977	-				+0.3
2,109,977	-				+2.9
2,109,992	+				+0.9
2,109,992	+				+1.8
2,109,992	+				+0.8
2,109,992	+				+1.3
2,109,993	-				-0.0
2,109,993	-				-1.0
2,109,993	-				-2.3
2,109,993	-				+0.8
2,109,999	+				+0.3
2,109,999	+				+1.2
2,110,000	-				+0.5
2,110,000	-				-1.0
2,110,000	-				+1.8
2,110,012	+				-0.0
2,110,012	+				-1.5
2,110,042	+				-1.2
2,110,042	+				-0.8
2,110,042	+				-0.0
2,110,042	+				-0.5
2,110,042	+				+1.5
2,110,043	-				+0.7
2,110,043	-				+0.7
2,110,043	-				-0.4
2,110,132	+		Pf1N1B4_1834	0.50	+1.1
2,110,132	+		Pf1N1B4_1834	0.50	-0.5
2,110,132	+		Pf1N1B4_1834	0.50	-1.2
2,110,132	+		Pf1N1B4_1834	0.50	+0.3
2,110,132	+		Pf1N1B4_1834	0.50	-1.9
2,110,132	+		Pf1N1B4_1834	0.50	+0.7
2,110,132	+		Pf1N1B4_1834	0.50	+0.1
2,110,132	+		Pf1N1B4_1834	0.50	-1.4
2,110,132	+		Pf1N1B4_1834	0.50	+0.8
2,110,132	+		Pf1N1B4_1834	0.50	-0.9
2,110,132	+		Pf1N1B4_1834	0.50	-1.0
2,110,132	+		Pf1N1B4_1834	0.50	-0.6
2,110,133	-		Pf1N1B4_1834	0.50	-0.0
2,110,133	-		Pf1N1B4_1834	0.50	-2.3
2,110,133	-		Pf1N1B4_1834	0.50	-0.8
2,110,133	-		Pf1N1B4_1834	0.50	-1.9
2,110,233	+				-1.5
2,110,234	-				-1.7
2,110,234	-				+0.8
2,110,234	-				-0.2
2,110,244	+				+0.3
2,110,245	-				+1.8
2,110,248	+				-1.7
2,110,248	+				+0.5
2,110,248	+				-1.2
2,110,248	+				+1.9
2,110,393	-		Pf1N1B4_1835	0.10	+0.4
2,110,496	+		Pf1N1B4_1835	0.56	-0.6
2,110,496	+				+0.9
2,110,497	-		Pf1N1B4_1835	0.56	+1.6
2,110,497	-		Pf1N1B4_1835	0.56	-0.7
2,110,580	+				+2.0
2,110,580	+				+2.3
2,110,580	+				+0.2
2,110,580	+				+0.5
2,110,581	-				-1.7
2,110,690	+				+1.1
2,110,690	+				-1.0
2,110,690	+				-0.4
2,110,690	+				+0.5
2,110,690	+				-1.7
2,110,691	-				-1.5
2,110,730	+				-0.7
2,110,730	+				-0.7
2,110,730	+				+0.3
2,110,731	-				-2.0
2,110,731	-				-0.4
2,110,868	+				+0.3
2,110,868	+		Pf1N1B4_1836	0.21	-0.9
2,110,869	-		Pf1N1B4_1836	0.21	+0.3
2,110,869	-		Pf1N1B4_1836	0.21	-0.1
2,110,869	-		Pf1N1B4_1836	0.21	+1.3
2,110,869	-		Pf1N1B4_1836	0.21	+0.5
2,110,869	-		Pf1N1B4_1836	0.21	-0.5
2,111,002	+		Pf1N1B4_1836	0.34	-1.7
2,111,002	+		Pf1N1B4_1836	0.34	-1.0
2,111,002	+		Pf1N1B4_1836	0.34	-1.0
2,111,003	-		Pf1N1B4_1836	0.34	+0.6
2,111,003	-		Pf1N1B4_1836	0.34	+1.1
2,111,003	-		Pf1N1B4_1836	0.34	+0.0
2,111,003	-		Pf1N1B4_1836	0.34	+0.4
2,111,003	-		Pf1N1B4_1836	0.34	+1.0
2,111,224	+		Pf1N1B4_1836	0.56	+1.2