Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1532

Experiment: Rifampicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1531 and Pf1N1B4_1532 are separated by 181 nucleotidesPf1N1B4_1532 and Pf1N1B4_1533 are separated by 246 nucleotides Pf1N1B4_1531 - Permeases of the major facilitator superfamily, at 1,762,394 to 1,763,668 _1531 Pf1N1B4_1532 - Uroporphyrinogen III decarboxylase (EC 4.1.1.37), at 1,763,850 to 1,764,917 _1532 Pf1N1B4_1533 - Glutamate synthase [NADPH] small chain (EC 1.4.1.13), at 1,765,164 to 1,766,582 _1533 Position (kb) 1763 1764 1765Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1762.892 kb on + strand, within Pf1N1B4_1531at 1762.892 kb on + strand, within Pf1N1B4_1531at 1762.892 kb on + strand, within Pf1N1B4_1531at 1762.892 kb on + strand, within Pf1N1B4_1531at 1762.892 kb on + strand, within Pf1N1B4_1531at 1762.945 kb on - strand, within Pf1N1B4_1531at 1763.177 kb on + strand, within Pf1N1B4_1531at 1763.177 kb on + strand, within Pf1N1B4_1531at 1763.177 kb on + strand, within Pf1N1B4_1531at 1763.177 kb on + strand, within Pf1N1B4_1531at 1763.178 kb on - strand, within Pf1N1B4_1531at 1763.178 kb on - strand, within Pf1N1B4_1531at 1763.249 kb on + strand, within Pf1N1B4_1531at 1763.249 kb on + strand, within Pf1N1B4_1531at 1763.249 kb on + strand, within Pf1N1B4_1531at 1763.249 kb on + strand, within Pf1N1B4_1531at 1763.250 kb on - strand, within Pf1N1B4_1531at 1763.264 kb on + strand, within Pf1N1B4_1531at 1763.264 kb on + strand, within Pf1N1B4_1531at 1763.264 kb on + strand, within Pf1N1B4_1531at 1763.264 kb on + strand, within Pf1N1B4_1531at 1763.264 kb on + strand, within Pf1N1B4_1531at 1763.264 kb on + strand, within Pf1N1B4_1531at 1763.264 kb on + strand, within Pf1N1B4_1531at 1763.264 kb on + strand, within Pf1N1B4_1531at 1763.265 kb on - strand, within Pf1N1B4_1531at 1763.265 kb on - strand, within Pf1N1B4_1531at 1763.265 kb on - strand, within Pf1N1B4_1531at 1763.265 kb on - strand, within Pf1N1B4_1531at 1763.443 kb on + strand, within Pf1N1B4_1531at 1763.444 kb on - strand, within Pf1N1B4_1531at 1763.444 kb on - strand, within Pf1N1B4_1531at 1763.495 kb on + strand, within Pf1N1B4_1531at 1763.495 kb on + strand, within Pf1N1B4_1531at 1763.496 kb on - strand, within Pf1N1B4_1531at 1763.496 kb on - strand, within Pf1N1B4_1531at 1763.496 kb on - strand, within Pf1N1B4_1531at 1763.507 kb on + strand, within Pf1N1B4_1531at 1763.508 kb on - strand, within Pf1N1B4_1531at 1763.508 kb on - strand, within Pf1N1B4_1531at 1763.508 kb on - strand, within Pf1N1B4_1531at 1763.510 kb on + strand, within Pf1N1B4_1531at 1763.587 kb on + strandat 1763.731 kb on + strandat 1763.731 kb on + strandat 1763.732 kb on - strandat 1763.821 kb on + strandat 1763.837 kb on + strandat 1763.860 kb on + strandat 1763.861 kb on - strandat 1763.861 kb on - strandat 1765.160 kb on - strandat 1765.160 kb on - strandat 1765.177 kb on + strandat 1765.178 kb on - strandat 1765.295 kb on - strandat 1765.664 kb on + strand, within Pf1N1B4_1533at 1765.664 kb on + strand, within Pf1N1B4_1533at 1765.664 kb on + strand, within Pf1N1B4_1533at 1765.664 kb on + strand, within Pf1N1B4_1533at 1765.664 kb on + strand, within Pf1N1B4_1533at 1765.664 kb on + strand, within Pf1N1B4_1533at 1765.665 kb on - strand, within Pf1N1B4_1533at 1765.665 kb on - strand, within Pf1N1B4_1533at 1765.665 kb on - strand, within Pf1N1B4_1533at 1765.665 kb on - strand, within Pf1N1B4_1533at 1765.665 kb on - strand, within Pf1N1B4_1533at 1765.843 kb on + strand, within Pf1N1B4_1533at 1765.843 kb on + strand, within Pf1N1B4_1533at 1765.843 kb on + strand, within Pf1N1B4_1533at 1765.843 kb on + strand, within Pf1N1B4_1533at 1765.843 kb on + strand, within Pf1N1B4_1533at 1765.843 kb on + strand, within Pf1N1B4_1533at 1765.843 kb on + strand, within Pf1N1B4_1533at 1765.843 kb on + strand, within Pf1N1B4_1533at 1765.844 kb on - strand, within Pf1N1B4_1533at 1765.844 kb on - strand, within Pf1N1B4_1533at 1765.844 kb on - strand, within Pf1N1B4_1533at 1765.844 kb on - strand, within Pf1N1B4_1533at 1765.844 kb on - strand, within Pf1N1B4_1533at 1765.844 kb on - strand, within Pf1N1B4_1533at 1765.844 kb on - strand, within Pf1N1B4_1533at 1765.844 kb on - strand, within Pf1N1B4_1533at 1765.844 kb on - strand, within Pf1N1B4_1533at 1765.844 kb on - strand, within Pf1N1B4_1533at 1765.844 kb on - strand, within Pf1N1B4_1533at 1765.844 kb on - strand, within Pf1N1B4_1533at 1765.849 kb on + strand, within Pf1N1B4_1533at 1765.849 kb on + strand, within Pf1N1B4_1533at 1765.849 kb on + strand, within Pf1N1B4_1533at 1765.849 kb on + strand, within Pf1N1B4_1533at 1765.849 kb on + strand, within Pf1N1B4_1533at 1765.849 kb on + strand, within Pf1N1B4_1533at 1765.849 kb on + strand, within Pf1N1B4_1533at 1765.849 kb on + strand, within Pf1N1B4_1533at 1765.849 kb on + strand, within Pf1N1B4_1533at 1765.849 kb on + strand, within Pf1N1B4_1533at 1765.849 kb on + strand, within Pf1N1B4_1533at 1765.849 kb on + strand, within Pf1N1B4_1533at 1765.850 kb on - strand, within Pf1N1B4_1533at 1765.850 kb on - strand, within Pf1N1B4_1533at 1765.850 kb on - strand, within Pf1N1B4_1533at 1765.850 kb on - strand, within Pf1N1B4_1533at 1765.850 kb on - strand, within Pf1N1B4_1533at 1765.850 kb on - strand, within Pf1N1B4_1533at 1765.850 kb on - strandat 1765.850 kb on - strand, within Pf1N1B4_1533at 1765.879 kb on + strand, within Pf1N1B4_1533at 1765.879 kb on + strand, within Pf1N1B4_1533

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml
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1,762,892 + Pf1N1B4_1531 0.39 -0.4
1,762,892 + Pf1N1B4_1531 0.39 -0.0
1,762,892 + Pf1N1B4_1531 0.39 -0.4
1,762,892 + Pf1N1B4_1531 0.39 +0.2
1,762,892 + Pf1N1B4_1531 0.39 +0.9
1,762,945 - Pf1N1B4_1531 0.43 -1.4
1,763,177 + Pf1N1B4_1531 0.61 +0.7
1,763,177 + Pf1N1B4_1531 0.61 -0.4
1,763,177 + Pf1N1B4_1531 0.61 +1.0
1,763,177 + Pf1N1B4_1531 0.61 +0.7
1,763,178 - Pf1N1B4_1531 0.61 +0.5
1,763,178 - Pf1N1B4_1531 0.61 -0.8
1,763,249 + Pf1N1B4_1531 0.67 +3.0
1,763,249 + Pf1N1B4_1531 0.67 -0.0
1,763,249 + Pf1N1B4_1531 0.67 -0.0
1,763,249 + Pf1N1B4_1531 0.67 +2.4
1,763,250 - Pf1N1B4_1531 0.67 -0.8
1,763,264 + Pf1N1B4_1531 0.68 +0.2
1,763,264 + Pf1N1B4_1531 0.68 +0.7
1,763,264 + Pf1N1B4_1531 0.68 -1.1
1,763,264 + Pf1N1B4_1531 0.68 -1.5
1,763,264 + Pf1N1B4_1531 0.68 -0.5
1,763,264 + Pf1N1B4_1531 0.68 -1.1
1,763,264 + Pf1N1B4_1531 0.68 +0.5
1,763,264 + Pf1N1B4_1531 0.68 -1.4
1,763,265 - Pf1N1B4_1531 0.68 +0.8
1,763,265 - Pf1N1B4_1531 0.68 +0.6
1,763,265 - Pf1N1B4_1531 0.68 +0.6
1,763,265 - Pf1N1B4_1531 0.68 -0.5
1,763,443 + Pf1N1B4_1531 0.82 -1.5
1,763,444 - Pf1N1B4_1531 0.82 +0.5
1,763,444 - Pf1N1B4_1531 0.82 -0.4
1,763,495 + Pf1N1B4_1531 0.86 +0.6
1,763,495 + Pf1N1B4_1531 0.86 -1.1
1,763,496 - Pf1N1B4_1531 0.86 +0.8
1,763,496 - Pf1N1B4_1531 0.86 +0.4
1,763,496 - Pf1N1B4_1531 0.86 +0.4
1,763,507 + Pf1N1B4_1531 0.87 -0.2
1,763,508 - Pf1N1B4_1531 0.87 -2.1
1,763,508 - Pf1N1B4_1531 0.87 -1.0
1,763,508 - Pf1N1B4_1531 0.87 +0.2
1,763,510 + Pf1N1B4_1531 0.88 -1.6
1,763,587 + -1.1
1,763,731 + +0.9
1,763,731 + +0.4
1,763,732 - +2.0
1,763,821 + -0.2
1,763,837 + -2.6
1,763,860 + -1.6
1,763,861 - +0.9
1,763,861 - -1.4
1,765,160 - -1.8
1,765,160 - -1.0
1,765,177 + -0.5
1,765,178 - -0.4
1,765,295 - +0.6
1,765,664 + Pf1N1B4_1533 0.35 +2.2
1,765,664 + Pf1N1B4_1533 0.35 +2.0
1,765,664 + Pf1N1B4_1533 0.35 +0.6
1,765,664 + Pf1N1B4_1533 0.35 -2.4
1,765,664 + Pf1N1B4_1533 0.35 -0.1
1,765,664 + Pf1N1B4_1533 0.35 +1.2
1,765,665 - Pf1N1B4_1533 0.35 -2.0
1,765,665 - Pf1N1B4_1533 0.35 -1.0
1,765,665 - Pf1N1B4_1533 0.35 -0.5
1,765,665 - Pf1N1B4_1533 0.35 -2.6
1,765,665 - Pf1N1B4_1533 0.35 -1.4
1,765,843 + Pf1N1B4_1533 0.48 +0.1
1,765,843 + Pf1N1B4_1533 0.48 +0.3
1,765,843 + Pf1N1B4_1533 0.48 +0.6
1,765,843 + Pf1N1B4_1533 0.48 +1.7
1,765,843 + Pf1N1B4_1533 0.48 +1.5
1,765,843 + Pf1N1B4_1533 0.48 -1.8
1,765,843 + Pf1N1B4_1533 0.48 -0.8
1,765,843 + Pf1N1B4_1533 0.48 +0.4
1,765,844 - Pf1N1B4_1533 0.48 +0.9
1,765,844 - Pf1N1B4_1533 0.48 -1.1
1,765,844 - Pf1N1B4_1533 0.48 -0.8
1,765,844 - Pf1N1B4_1533 0.48 +0.0
1,765,844 - Pf1N1B4_1533 0.48 -1.1
1,765,844 - Pf1N1B4_1533 0.48 -0.8
1,765,844 - Pf1N1B4_1533 0.48 -0.4
1,765,844 - Pf1N1B4_1533 0.48 +1.6
1,765,844 - Pf1N1B4_1533 0.48 -2.4
1,765,844 - Pf1N1B4_1533 0.48 +1.4
1,765,844 - Pf1N1B4_1533 0.48 -0.2
1,765,844 - Pf1N1B4_1533 0.48 -0.0
1,765,849 + Pf1N1B4_1533 0.48 -1.2
1,765,849 + Pf1N1B4_1533 0.48 +0.7
1,765,849 + Pf1N1B4_1533 0.48 +0.4
1,765,849 + Pf1N1B4_1533 0.48 -0.5
1,765,849 + Pf1N1B4_1533 0.48 +1.6
1,765,849 + Pf1N1B4_1533 0.48 +0.1
1,765,849 + Pf1N1B4_1533 0.48 -0.2
1,765,849 + Pf1N1B4_1533 0.48 -0.9
1,765,849 + Pf1N1B4_1533 0.48 -1.4
1,765,849 + Pf1N1B4_1533 0.48 +2.0
1,765,849 + Pf1N1B4_1533 0.48 -1.4
1,765,849 + Pf1N1B4_1533 0.48 +0.3
1,765,850 - Pf1N1B4_1533 0.48 +1.8
1,765,850 - Pf1N1B4_1533 0.48 +0.0
1,765,850 - Pf1N1B4_1533 0.48 -0.8
1,765,850 - Pf1N1B4_1533 0.48 -0.4
1,765,850 - Pf1N1B4_1533 0.48 -2.2
1,765,850 - Pf1N1B4_1533 0.48 +0.2
1,765,850 - -0.8
1,765,850 - Pf1N1B4_1533 0.48 +1.5
1,765,879 + Pf1N1B4_1533 0.50 +0.9
1,765,879 + Pf1N1B4_1533 0.50 +0.4

Or see this region's nucleotide sequence