Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1445

Experiment: Rifampicin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.004 mg/ml
1,655,489	-		Pf1N1B4_1443	0.84	-0.7
1,655,489	-		Pf1N1B4_1443	0.84	+1.5
1,655,553	+				-1.3
1,655,629	+		Pf1N1B4_1444	0.12	+0.2
1,655,629	+		Pf1N1B4_1444	0.12	-0.3
1,655,629	+		Pf1N1B4_1444	0.12	+1.9
1,655,630	-		Pf1N1B4_1444	0.13	+0.2
1,655,630	-		Pf1N1B4_1444	0.13	-1.1
1,655,630	-		Pf1N1B4_1444	0.13	-0.2
1,655,630	-		Pf1N1B4_1444	0.13	+0.0
1,655,630	-		Pf1N1B4_1444	0.13	+0.4
1,655,687	-		Pf1N1B4_1444	0.22	+1.9
1,655,687	-		Pf1N1B4_1444	0.22	+0.6
1,655,751	+		Pf1N1B4_1444	0.32	+0.6
1,655,752	-		Pf1N1B4_1444	0.32	-1.6
1,655,752	-				-0.4
1,655,752	-		Pf1N1B4_1444	0.32	+0.8
1,655,794	-		Pf1N1B4_1444	0.39	+0.2
1,655,822	+		Pf1N1B4_1444	0.44	+1.4
1,655,871	-		Pf1N1B4_1444	0.52	-2.1
1,655,988	+		Pf1N1B4_1444	0.71	-1.6
1,656,096	+		Pf1N1B4_1444	0.88	+1.6
1,656,096	+		Pf1N1B4_1444	0.88	-1.1
1,656,096	+		Pf1N1B4_1444	0.88	-0.4
1,656,096	+		Pf1N1B4_1444	0.88	-0.1
1,656,097	-		Pf1N1B4_1444	0.88	+0.8
1,656,097	-		Pf1N1B4_1444	0.88	-0.7
1,656,097	-		Pf1N1B4_1444	0.88	-0.2
1,656,108	+				-1.1
1,656,108	+				+1.9
1,656,215	-				-1.0
1,656,313	+				-0.0
1,656,313	+				-2.3
1,656,313	+				-1.3
1,656,313	+				+1.3
1,656,313	+				-0.8
1,656,313	+				-0.2
1,656,313	+				+1.6
1,656,314	-				-1.1
1,656,314	-				-2.5
1,656,317	+				+0.7
1,656,317	+				+3.8
1,656,318	-				+1.0
1,656,318	-				-1.9
1,656,318	-				-1.6
1,656,318	-				-2.1
1,656,318	-				-1.3
1,656,322	+				+0.2
1,656,322	+				-0.1
1,656,322	+				+0.8
1,656,387	-				-1.4
1,656,477	-		Pf1N1B4_1445	0.11	-2.1
1,656,477	-		Pf1N1B4_1445	0.11	+0.5
1,656,496	+		Pf1N1B4_1445	0.13	-0.9
1,656,496	+		Pf1N1B4_1445	0.13	-2.6
1,656,654	+		Pf1N1B4_1445	0.34	-1.6
1,656,654	+		Pf1N1B4_1445	0.34	-2.7
1,656,655	-		Pf1N1B4_1445	0.34	-0.8
1,656,655	-		Pf1N1B4_1445	0.34	-2.8
1,656,655	-		Pf1N1B4_1445	0.34	-2.3
1,656,655	-				+0.2
1,656,719	+		Pf1N1B4_1445	0.43	+0.3
1,656,719	+		Pf1N1B4_1445	0.43	-0.7
1,656,719	+		Pf1N1B4_1445	0.43	-2.0
1,656,719	+		Pf1N1B4_1445	0.43	-1.8
1,656,720	-		Pf1N1B4_1445	0.43	+0.1
1,656,720	-		Pf1N1B4_1445	0.43	-2.0
1,656,720	-		Pf1N1B4_1445	0.43	-1.1
1,656,720	-		Pf1N1B4_1445	0.43	-1.2
1,656,735	+		Pf1N1B4_1445	0.45	-2.0
1,656,735	+		Pf1N1B4_1445	0.45	+0.1
1,656,735	+		Pf1N1B4_1445	0.45	-1.1
1,656,736	-		Pf1N1B4_1445	0.45	-0.8
1,656,736	-		Pf1N1B4_1445	0.45	+0.2
1,656,736	-		Pf1N1B4_1445	0.45	-0.5
1,656,736	-		Pf1N1B4_1445	0.45	-0.5
1,656,736	-		Pf1N1B4_1445	0.45	-0.4
1,656,779	+		Pf1N1B4_1445	0.51	+0.8
1,656,780	-		Pf1N1B4_1445	0.51	-1.6
1,656,780	-		Pf1N1B4_1445	0.51	+0.4
1,656,780	-		Pf1N1B4_1445	0.51	-0.7
1,656,780	-		Pf1N1B4_1445	0.51	-0.1
1,656,830	+				+1.2
1,656,830	+		Pf1N1B4_1445	0.58	-2.1
1,656,830	+		Pf1N1B4_1445	0.58	-1.4
1,656,830	+		Pf1N1B4_1445	0.58	-2.6
1,656,830	+		Pf1N1B4_1445	0.58	-0.1
1,656,830	+		Pf1N1B4_1445	0.58	+0.2
1,656,830	+		Pf1N1B4_1445	0.58	-1.1
1,656,830	+		Pf1N1B4_1445	0.58	-1.8
1,656,831	-		Pf1N1B4_1445	0.58	-1.8
1,656,831	-		Pf1N1B4_1445	0.58	-0.6
1,656,831	-		Pf1N1B4_1445	0.58	+0.0
1,656,831	-		Pf1N1B4_1445	0.58	-2.1
1,656,831	-		Pf1N1B4_1445	0.58	+0.2
1,656,831	-		Pf1N1B4_1445	0.58	-0.4
1,656,831	-		Pf1N1B4_1445	0.58	-1.4
1,656,847	+				-1.1
1,656,847	+		Pf1N1B4_1445	0.60	-2.7
1,656,847	+		Pf1N1B4_1445	0.60	+0.0
1,656,848	-		Pf1N1B4_1445	0.60	-0.8
1,656,848	-		Pf1N1B4_1445	0.60	-1.6
1,656,848	-		Pf1N1B4_1445	0.60	-2.0
1,656,848	-		Pf1N1B4_1445	0.60	-1.4
1,656,848	-				-1.6
1,656,848	-		Pf1N1B4_1445	0.60	-1.8
1,657,014	-		Pf1N1B4_1445	0.82	-1.4
1,657,034	+		Pf1N1B4_1445	0.85	-1.7
1,657,034	+		Pf1N1B4_1445	0.85	-1.4
1,657,035	-		Pf1N1B4_1445	0.85	+0.6
1,657,035	-		Pf1N1B4_1445	0.85	-4.1
1,657,035	-				+1.8
1,657,139	-				+0.4
1,657,237	+				+0.3
1,657,238	-				+0.2
1,657,238	-				+1.4
1,657,238	-				+0.2
1,657,238	-				-0.3
1,657,238	-				+0.5
1,657,296	+		Pf1N1B4_1446	0.15	-0.6
1,657,378	-		Pf1N1B4_1446	0.21	+0.6
1,657,630	+				+0.2
1,657,630	+		Pf1N1B4_1446	0.41	-1.2
1,657,868	+		Pf1N1B4_1446	0.60	+0.8
1,657,869	-		Pf1N1B4_1446	0.60	+0.4
1,657,869	-		Pf1N1B4_1446	0.60	-1.4
1,657,869	-		Pf1N1B4_1446	0.60	-0.1
1,657,869	-		Pf1N1B4_1446	0.60	+0.7
1,657,869	-		Pf1N1B4_1446	0.60	+0.6
1,657,893	-		Pf1N1B4_1446	0.62	-1.6