Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1436

Experiment: Rifampicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1435 and Pf1N1B4_1436 are separated by 249 nucleotidesPf1N1B4_1436 and Pf1N1B4_1437 are separated by 176 nucleotides Pf1N1B4_1435 - HAMP domain protein, at 1,645,080 to 1,646,606 _1435 Pf1N1B4_1436 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 1,646,856 to 1,647,569 _1436 Pf1N1B4_1437 - Topoisomerase IV subunit A (EC 5.99.1.-), at 1,647,746 to 1,650,013 _1437 Position (kb) 1646 1647 1648Strain fitness (log2 ratio) -1 0 1at 1646.857 kb on + strandat 1646.857 kb on + strandat 1646.858 kb on - strandat 1646.858 kb on - strandat 1647.398 kb on - strand, within Pf1N1B4_1436at 1647.717 kb on + strandat 1647.718 kb on - strandat 1647.724 kb on + strandat 1647.724 kb on + strandat 1647.739 kb on - strandat 1647.739 kb on - strandat 1647.748 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.004 mg/ml
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1,646,857 + +0.2
1,646,857 + +0.2
1,646,858 - +0.4
1,646,858 - +0.7
1,647,398 - Pf1N1B4_1436 0.76 -1.4
1,647,717 + -0.4
1,647,718 - -1.1
1,647,724 + +1.0
1,647,724 + -0.3
1,647,739 - -1.6
1,647,739 - -0.1
1,647,748 - -0.0

Or see this region's nucleotide sequence