Experiment: PYE with Cobalt chloride 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01937 and CCNA_01938 overlap by 4 nucleotides CCNA_01938 and CCNA_01939 overlap by 8 nucleotides CCNA_01939 and CCNA_01940 overlap by 4 nucleotides
CCNA_01937: CCNA_01937 - FeS assembly protein SufD, at 2,080,163 to 2,081,191
_01937
CCNA_01938: CCNA_01938 - ATP-dependent transporter SufC, at 2,081,188 to 2,081,937
_01938
CCNA_01939: CCNA_01939 - ADP-ribosylglycohydrolase, at 2,081,930 to 2,082,319
_01939
CCNA_01940: CCNA_01940 - ABC transporter-associated protein SufB, at 2,082,316 to 2,083,785
_01940
Position (kb)
2081
2082
2083 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2081.099 kb on - strand at 2081.174 kb on - strand at 2081.974 kb on - strand, within CCNA_01939 at 2082.010 kb on - strand, within CCNA_01939 at 2082.045 kb on + strand, within CCNA_01939 at 2082.045 kb on + strand, within CCNA_01939 at 2082.053 kb on - strand, within CCNA_01939 at 2082.087 kb on - strand, within CCNA_01939 at 2082.191 kb on + strand, within CCNA_01939 at 2082.216 kb on - strand, within CCNA_01939 at 2082.257 kb on - strand, within CCNA_01939 at 2082.288 kb on - strand at 2082.302 kb on - strand at 2082.302 kb on - strand at 2082.304 kb on + strand at 2082.304 kb on + strand at 2082.306 kb on - strand at 2082.312 kb on - strand at 2082.312 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Cobalt chloride 0.08 mM remove 2,081,099 - -2.8 2,081,174 - -2.2 2,081,974 - CCNA_01939 0.11 +0.1 2,082,010 - CCNA_01939 0.21 -0.3 2,082,045 + CCNA_01939 0.29 +0.4 2,082,045 + CCNA_01939 0.29 -1.2 2,082,053 - CCNA_01939 0.32 -0.3 2,082,087 - CCNA_01939 0.40 -1.7 2,082,191 + CCNA_01939 0.67 -1.3 2,082,216 - CCNA_01939 0.73 -2.3 2,082,257 - CCNA_01939 0.84 -0.4 2,082,288 - -2.8 2,082,302 - -0.1 2,082,302 - -2.9 2,082,304 + -0.7 2,082,304 + +0.7 2,082,306 - -1.7 2,082,312 - -2.4 2,082,312 - -0.9
Or see this region's nucleotide sequence