Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29810

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29805 and AO356_29810 overlap by 4 nucleotidesAO356_29810 and AO356_29815 are separated by 32 nucleotides AO356_29805: AO356_29805 - FAD-dependent oxidoreductase, at 6,929,894 to 6,931,318 _29805 AO356_29810: AO356_29810 - cupin, at 6,931,315 to 6,931,656 _29810 AO356_29815: AO356_29815 - spermidine/putrescine ABC transporter substrate-binding protein, at 6,931,689 to 6,932,774 _29815 Position (kb) 6931 6932Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6930.405 kb on + strand, within AO356_29805at 6930.405 kb on + strand, within AO356_29805at 6930.405 kb on + strand, within AO356_29805at 6930.406 kb on - strand, within AO356_29805at 6930.423 kb on - strand, within AO356_29805at 6930.474 kb on + strand, within AO356_29805at 6930.510 kb on + strand, within AO356_29805at 6930.511 kb on - strand, within AO356_29805at 6930.614 kb on + strand, within AO356_29805at 6930.699 kb on + strand, within AO356_29805at 6930.699 kb on + strand, within AO356_29805at 6930.699 kb on + strand, within AO356_29805at 6930.700 kb on - strand, within AO356_29805at 6930.700 kb on - strand, within AO356_29805at 6930.761 kb on + strand, within AO356_29805at 6930.761 kb on + strand, within AO356_29805at 6930.762 kb on - strand, within AO356_29805at 6930.887 kb on - strand, within AO356_29805at 6931.033 kb on - strand, within AO356_29805at 6931.557 kb on - strand, within AO356_29810at 6931.557 kb on - strand, within AO356_29810at 6931.557 kb on - strand, within AO356_29810at 6931.560 kb on + strand, within AO356_29810at 6931.560 kb on + strand, within AO356_29810at 6931.560 kb on + strand, within AO356_29810at 6931.616 kb on + strand, within AO356_29810at 6931.616 kb on + strand, within AO356_29810at 6931.616 kb on + strand, within AO356_29810at 6931.617 kb on - strand, within AO356_29810at 6931.617 kb on - strand, within AO356_29810at 6931.639 kb on + strandat 6931.639 kb on + strandat 6931.640 kb on - strandat 6931.678 kb on + strandat 6931.679 kb on - strandat 6931.785 kb on + strandat 6931.786 kb on - strandat 6931.842 kb on + strand, within AO356_29815at 6931.852 kb on - strand, within AO356_29815at 6931.903 kb on - strand, within AO356_29815at 6931.903 kb on - strand, within AO356_29815at 6932.128 kb on + strand, within AO356_29815at 6932.129 kb on - strand, within AO356_29815at 6932.129 kb on - strand, within AO356_29815at 6932.241 kb on + strand, within AO356_29815at 6932.241 kb on + strand, within AO356_29815at 6932.242 kb on - strand, within AO356_29815at 6932.242 kb on - strand, within AO356_29815at 6932.242 kb on - strand, within AO356_29815at 6932.302 kb on + strand, within AO356_29815at 6932.303 kb on - strand, within AO356_29815at 6932.320 kb on - strandat 6932.328 kb on + strand, within AO356_29815at 6932.329 kb on - strand, within AO356_29815at 6932.329 kb on - strand, within AO356_29815at 6932.346 kb on + strand, within AO356_29815at 6932.347 kb on - strand, within AO356_29815at 6932.457 kb on + strand, within AO356_29815at 6932.457 kb on + strand, within AO356_29815at 6932.458 kb on - strand, within AO356_29815at 6932.458 kb on - strand, within AO356_29815at 6932.553 kb on + strand, within AO356_29815at 6932.553 kb on + strand, within AO356_29815at 6932.602 kb on - strand, within AO356_29815

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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6,930,405 + AO356_29805 0.36 +1.7
6,930,405 + AO356_29805 0.36 +0.8
6,930,405 + AO356_29805 0.36 -0.1
6,930,406 - AO356_29805 0.36 -0.4
6,930,423 - AO356_29805 0.37 +1.2
6,930,474 + AO356_29805 0.41 +0.3
6,930,510 + AO356_29805 0.43 -0.6
6,930,511 - AO356_29805 0.43 +0.8
6,930,614 + AO356_29805 0.51 +2.5
6,930,699 + AO356_29805 0.56 -0.0
6,930,699 + AO356_29805 0.56 -1.0
6,930,699 + AO356_29805 0.56 +0.9
6,930,700 - AO356_29805 0.57 -2.0
6,930,700 - AO356_29805 0.57 +1.9
6,930,761 + AO356_29805 0.61 +0.0
6,930,761 + AO356_29805 0.61 +1.1
6,930,762 - AO356_29805 0.61 +0.6
6,930,887 - AO356_29805 0.70 +0.4
6,931,033 - AO356_29805 0.80 +0.9
6,931,557 - AO356_29810 0.71 +1.0
6,931,557 - AO356_29810 0.71 +1.0
6,931,557 - AO356_29810 0.71 +0.2
6,931,560 + AO356_29810 0.72 +0.4
6,931,560 + AO356_29810 0.72 +0.1
6,931,560 + AO356_29810 0.72 +0.1
6,931,616 + AO356_29810 0.88 +1.4
6,931,616 + AO356_29810 0.88 +1.4
6,931,616 + AO356_29810 0.88 +2.4
6,931,617 - AO356_29810 0.88 +1.1
6,931,617 - AO356_29810 0.88 +0.7
6,931,639 + +0.5
6,931,639 + +2.9
6,931,640 - +2.0
6,931,678 + -0.0
6,931,679 - +1.8
6,931,785 + -0.0
6,931,786 - -0.2
6,931,842 + AO356_29815 0.14 +2.2
6,931,852 - AO356_29815 0.15 +1.0
6,931,903 - AO356_29815 0.20 -1.0
6,931,903 - AO356_29815 0.20 -1.3
6,932,128 + AO356_29815 0.40 -0.6
6,932,129 - AO356_29815 0.41 +1.0
6,932,129 - AO356_29815 0.41 +1.4
6,932,241 + AO356_29815 0.51 -0.2
6,932,241 + AO356_29815 0.51 -0.5
6,932,242 - AO356_29815 0.51 -0.6
6,932,242 - AO356_29815 0.51 -1.4
6,932,242 - AO356_29815 0.51 +0.3
6,932,302 + AO356_29815 0.56 +1.7
6,932,303 - AO356_29815 0.57 +0.3
6,932,320 - -0.5
6,932,328 + AO356_29815 0.59 +0.3
6,932,329 - AO356_29815 0.59 +0.1
6,932,329 - AO356_29815 0.59 -0.0
6,932,346 + AO356_29815 0.60 +0.3
6,932,347 - AO356_29815 0.61 +0.7
6,932,457 + AO356_29815 0.71 +3.3
6,932,457 + AO356_29815 0.71 +0.6
6,932,458 - AO356_29815 0.71 -0.5
6,932,458 - AO356_29815 0.71 -2.0
6,932,553 + AO356_29815 0.80 -0.7
6,932,553 + AO356_29815 0.80 +0.1
6,932,602 - AO356_29815 0.84 +1.5

Or see this region's nucleotide sequence