Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29785 and AO356_29790 are separated by 2 nucleotides AO356_29790 and AO356_29795 are separated by 29 nucleotides AO356_29795 and AO356_29800 are separated by 231 nucleotides
AO356_29785: AO356_29785 - ABC transporter permease, at 6,926,560 to 6,927,273
_29785
AO356_29790: AO356_29790 - ABC transporter permease, at 6,927,276 to 6,927,968
_29790
AO356_29795: AO356_29795 - amino acid transporter, at 6,927,998 to 6,928,804
_29795
AO356_29800: AO356_29800 - AraC family transcriptional regulator, at 6,929,036 to 6,929,836
_29800
Position (kb)
6927
6928
6929 Strain fitness (log2 ratio)
-1
0
1
2 at 6927.122 kb on + strand, within AO356_29785 at 6927.139 kb on - strand, within AO356_29785 at 6927.176 kb on - strand, within AO356_29785 at 6927.313 kb on + strand at 6927.326 kb on - strand at 6927.451 kb on + strand, within AO356_29790 at 6927.472 kb on + strand, within AO356_29790 at 6927.473 kb on - strand, within AO356_29790 at 6927.493 kb on - strand, within AO356_29790 at 6927.495 kb on + strand, within AO356_29790 at 6927.502 kb on + strand, within AO356_29790 at 6927.502 kb on + strand, within AO356_29790 at 6927.559 kb on - strand, within AO356_29790 at 6927.600 kb on + strand, within AO356_29790 at 6927.601 kb on - strand, within AO356_29790 at 6927.602 kb on + strand, within AO356_29790 at 6927.602 kb on + strand, within AO356_29790 at 6927.822 kb on + strand, within AO356_29790 at 6927.823 kb on - strand, within AO356_29790 at 6927.823 kb on - strand, within AO356_29790 at 6927.883 kb on - strand, within AO356_29790 at 6927.942 kb on - strand at 6927.996 kb on + strand at 6927.996 kb on + strand at 6927.997 kb on - strand at 6928.060 kb on + strand at 6928.178 kb on - strand, within AO356_29795 at 6928.262 kb on - strand, within AO356_29795 at 6928.339 kb on + strand, within AO356_29795 at 6928.807 kb on - strand at 6928.810 kb on + strand at 6928.810 kb on + strand at 6928.811 kb on - strand at 6928.918 kb on + strand at 6928.932 kb on + strand at 6928.932 kb on + strand at 6928.932 kb on + strand at 6928.932 kb on + strand at 6928.932 kb on + strand at 6928.933 kb on - strand at 6928.936 kb on + strand at 6928.936 kb on + strand at 6928.936 kb on + strand at 6928.937 kb on - strand at 6928.938 kb on + strand at 6928.938 kb on + strand at 6928.938 kb on + strand at 6928.938 kb on + strand at 6928.938 kb on + strand at 6928.938 kb on + strand at 6928.939 kb on - strand at 6928.939 kb on - strand at 6928.970 kb on + strand at 6928.971 kb on - strand at 6929.147 kb on + strand, within AO356_29800 at 6929.148 kb on - strand, within AO356_29800 at 6929.148 kb on - strand, within AO356_29800 at 6929.165 kb on + strand, within AO356_29800 at 6929.216 kb on + strand, within AO356_29800 at 6929.216 kb on + strand, within AO356_29800 at 6929.216 kb on + strand, within AO356_29800 at 6929.217 kb on - strand, within AO356_29800 at 6929.217 kb on - strand, within AO356_29800 at 6929.253 kb on - strand, within AO356_29800 at 6929.370 kb on + strand, within AO356_29800 at 6929.392 kb on + strand, within AO356_29800 at 6929.394 kb on + strand, within AO356_29800 at 6929.394 kb on + strand, within AO356_29800 at 6929.402 kb on + strand, within AO356_29800 at 6929.516 kb on + strand, within AO356_29800 at 6929.606 kb on + strand, within AO356_29800 at 6929.606 kb on + strand, within AO356_29800 at 6929.607 kb on - strand at 6929.639 kb on + strand, within AO356_29800 at 6929.646 kb on - strand, within AO356_29800
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3 remove 6,927,122 + AO356_29785 0.79 -1.0 6,927,139 - AO356_29785 0.81 +0.9 6,927,176 - AO356_29785 0.86 +1.0 6,927,313 + +0.3 6,927,326 - +2.3 6,927,451 + AO356_29790 0.25 +1.4 6,927,472 + AO356_29790 0.28 +1.1 6,927,473 - AO356_29790 0.28 -0.0 6,927,493 - AO356_29790 0.31 +1.2 6,927,495 + AO356_29790 0.32 +0.7 6,927,502 + AO356_29790 0.33 +0.3 6,927,502 + AO356_29790 0.33 +0.3 6,927,559 - AO356_29790 0.41 +0.2 6,927,600 + AO356_29790 0.47 -0.7 6,927,601 - AO356_29790 0.47 +0.5 6,927,602 + AO356_29790 0.47 +0.3 6,927,602 + AO356_29790 0.47 +1.1 6,927,822 + AO356_29790 0.79 +0.5 6,927,823 - AO356_29790 0.79 +0.5 6,927,823 - AO356_29790 0.79 +1.5 6,927,883 - AO356_29790 0.88 +1.3 6,927,942 - -0.6 6,927,996 + +0.9 6,927,996 + +1.1 6,927,997 - +0.1 6,928,060 + -0.0 6,928,178 - AO356_29795 0.22 +2.1 6,928,262 - AO356_29795 0.33 -0.0 6,928,339 + AO356_29795 0.42 -0.5 6,928,807 - -0.1 6,928,810 + +1.1 6,928,810 + +0.2 6,928,811 - +1.2 6,928,918 + -1.5 6,928,932 + -0.5 6,928,932 + +0.3 6,928,932 + +1.8 6,928,932 + +0.3 6,928,932 + +2.4 6,928,933 - -0.5 6,928,936 + +0.2 6,928,936 + +2.3 6,928,936 + +0.8 6,928,937 - +0.2 6,928,938 + +0.8 6,928,938 + +0.5 6,928,938 + +0.3 6,928,938 + +1.5 6,928,938 + +0.6 6,928,938 + +1.9 6,928,939 - -1.7 6,928,939 - -0.5 6,928,970 + +0.7 6,928,971 - +0.3 6,929,147 + AO356_29800 0.14 +1.0 6,929,148 - AO356_29800 0.14 +1.6 6,929,148 - AO356_29800 0.14 +1.8 6,929,165 + AO356_29800 0.16 +1.9 6,929,216 + AO356_29800 0.22 +0.5 6,929,216 + AO356_29800 0.22 +1.1 6,929,216 + AO356_29800 0.22 -0.2 6,929,217 - AO356_29800 0.23 +1.5 6,929,217 - AO356_29800 0.23 +0.3 6,929,253 - AO356_29800 0.27 +0.5 6,929,370 + AO356_29800 0.42 -0.5 6,929,392 + AO356_29800 0.44 +0.6 6,929,394 + AO356_29800 0.45 -0.0 6,929,394 + AO356_29800 0.45 +1.4 6,929,402 + AO356_29800 0.46 +0.7 6,929,516 + AO356_29800 0.60 -0.6 6,929,606 + AO356_29800 0.71 -0.0 6,929,606 + AO356_29800 0.71 +0.6 6,929,607 - +1.3 6,929,639 + AO356_29800 0.75 -0.0 6,929,646 - AO356_29800 0.76 +0.7
Or see this region's nucleotide sequence