Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29645

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_29640 and AO356_29645 overlap by 4 nucleotidesAO356_29645 and AO356_29650 overlap by 4 nucleotidesAO356_29650 and AO356_29655 are separated by 61 nucleotides AO356_29640: AO356_29640 - FAD-dependent oxidoreductase, at 6,896,124 to 6,897,413 _29640 AO356_29645: AO356_29645 - glutamine ABC transporter ATP-binding protein, at 6,897,410 to 6,898,156 _29645 AO356_29650: AO356_29650 - amino acid ABC transporter permease, at 6,898,153 to 6,898,809 _29650 AO356_29655: AO356_29655 - ABC transporter substrate-binding protein, at 6,898,871 to 6,899,629 _29655 Position (kb) 6897 6898 6899Strain fitness (log2 ratio) -2 -1 0 1 2at 6896.536 kb on + strand, within AO356_29640at 6896.537 kb on - strand, within AO356_29640at 6896.701 kb on - strand, within AO356_29640at 6896.893 kb on + strand, within AO356_29640at 6896.909 kb on + strand, within AO356_29640at 6896.996 kb on + strand, within AO356_29640at 6897.489 kb on - strand, within AO356_29645at 6897.842 kb on + strand, within AO356_29645at 6897.847 kb on - strand, within AO356_29645at 6897.847 kb on - strand, within AO356_29645at 6898.000 kb on - strand, within AO356_29645at 6898.000 kb on - strand, within AO356_29645at 6898.070 kb on + strand, within AO356_29645at 6898.071 kb on - strand, within AO356_29645at 6898.071 kb on - strand, within AO356_29645at 6898.139 kb on - strandat 6898.251 kb on - strand, within AO356_29650at 6898.251 kb on - strand, within AO356_29650at 6898.370 kb on + strand, within AO356_29650at 6898.592 kb on + strand, within AO356_29650at 6898.597 kb on - strand, within AO356_29650at 6898.598 kb on + strand, within AO356_29650at 6898.598 kb on + strand, within AO356_29650at 6898.599 kb on - strand, within AO356_29650at 6898.599 kb on - strand, within AO356_29650at 6898.599 kb on - strand, within AO356_29650at 6898.777 kb on - strandat 6898.777 kb on - strandat 6898.809 kb on + strandat 6899.014 kb on - strand, within AO356_29655at 6899.062 kb on - strand, within AO356_29655at 6899.143 kb on - strand, within AO356_29655

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
remove
6,896,536 + AO356_29640 0.32 +1.3
6,896,537 - AO356_29640 0.32 -1.1
6,896,701 - AO356_29640 0.45 -0.1
6,896,893 + AO356_29640 0.60 +1.3
6,896,909 + AO356_29640 0.61 +2.3
6,896,996 + AO356_29640 0.68 +0.9
6,897,489 - AO356_29645 0.11 +0.5
6,897,842 + AO356_29645 0.58 +2.0
6,897,847 - AO356_29645 0.59 +0.1
6,897,847 - AO356_29645 0.59 +0.4
6,898,000 - AO356_29645 0.79 +1.7
6,898,000 - AO356_29645 0.79 -1.1
6,898,070 + AO356_29645 0.88 -0.1
6,898,071 - AO356_29645 0.88 -0.5
6,898,071 - AO356_29645 0.88 -1.1
6,898,139 - -1.1
6,898,251 - AO356_29650 0.15 -2.6
6,898,251 - AO356_29650 0.15 +0.8
6,898,370 + AO356_29650 0.33 +0.9
6,898,592 + AO356_29650 0.67 +2.1
6,898,597 - AO356_29650 0.68 +1.3
6,898,598 + AO356_29650 0.68 -0.1
6,898,598 + AO356_29650 0.68 -2.1
6,898,599 - AO356_29650 0.68 -1.1
6,898,599 - AO356_29650 0.68 -0.1
6,898,599 - AO356_29650 0.68 +1.7
6,898,777 - -1.2
6,898,777 - +0.8
6,898,809 + +1.3
6,899,014 - AO356_29655 0.19 +1.1
6,899,062 - AO356_29655 0.25 +2.3
6,899,143 - AO356_29655 0.36 +0.7

Or see this region's nucleotide sequence