Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29520 and AO356_29525 are separated by 155 nucleotides AO356_29525 and AO356_29530 are separated by 190 nucleotides
AO356_29520: AO356_29520 - TonB-dependent receptor, at 6,864,466 to 6,866,805
_29520
AO356_29525: AO356_29525 - transcriptional regulator, at 6,866,961 to 6,867,905
_29525
AO356_29530: AO356_29530 - phosphonate monoester hydrolase, at 6,868,096 to 6,869,703
_29530
Position (kb)
6866
6867
6868 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 6865.982 kb on + strand, within AO356_29520 at 6865.983 kb on - strand, within AO356_29520 at 6866.021 kb on + strand, within AO356_29520 at 6866.022 kb on - strand, within AO356_29520 at 6866.022 kb on - strand, within AO356_29520 at 6866.063 kb on + strand, within AO356_29520 at 6866.063 kb on + strand, within AO356_29520 at 6866.064 kb on - strand, within AO356_29520 at 6866.120 kb on + strand, within AO356_29520 at 6866.120 kb on + strand, within AO356_29520 at 6866.121 kb on - strand, within AO356_29520 at 6866.223 kb on - strand, within AO356_29520 at 6866.223 kb on - strand, within AO356_29520 at 6866.289 kb on + strand, within AO356_29520 at 6866.290 kb on - strand, within AO356_29520 at 6866.290 kb on - strand, within AO356_29520 at 6866.406 kb on - strand, within AO356_29520 at 6866.406 kb on - strand, within AO356_29520 at 6866.420 kb on + strand, within AO356_29520 at 6866.420 kb on + strand, within AO356_29520 at 6866.420 kb on + strand, within AO356_29520 at 6866.420 kb on + strand, within AO356_29520 at 6866.420 kb on + strand, within AO356_29520 at 6866.420 kb on + strand, within AO356_29520 at 6866.421 kb on - strand, within AO356_29520 at 6866.421 kb on - strand, within AO356_29520 at 6866.421 kb on - strand, within AO356_29520 at 6866.421 kb on - strand, within AO356_29520 at 6866.421 kb on - strand, within AO356_29520 at 6866.507 kb on + strand, within AO356_29520 at 6866.507 kb on + strand, within AO356_29520 at 6866.508 kb on - strand, within AO356_29520 at 6866.508 kb on - strand, within AO356_29520 at 6866.629 kb on - strand at 6866.782 kb on + strand at 6866.783 kb on - strand at 6866.783 kb on - strand at 6866.805 kb on + strand at 6866.806 kb on - strand at 6866.829 kb on - strand at 6866.829 kb on - strand at 6866.829 kb on - strand at 6866.902 kb on + strand at 6866.902 kb on + strand at 6866.902 kb on + strand at 6866.903 kb on - strand at 6866.903 kb on - strand at 6866.904 kb on + strand at 6866.905 kb on - strand at 6867.283 kb on + strand, within AO356_29525 at 6867.444 kb on + strand, within AO356_29525 at 6867.610 kb on - strand, within AO356_29525 at 6867.639 kb on + strand, within AO356_29525 at 6867.951 kb on - strand at 6868.095 kb on + strand at 6868.095 kb on + strand at 6868.096 kb on - strand at 6868.129 kb on + strand at 6868.130 kb on - strand at 6868.130 kb on - strand at 6868.130 kb on - strand at 6868.130 kb on - strand at 6868.130 kb on - strand at 6868.160 kb on - strand at 6868.172 kb on - strand at 6868.191 kb on + strand at 6868.192 kb on - strand at 6868.243 kb on + strand at 6868.243 kb on + strand at 6868.245 kb on + strand at 6868.285 kb on + strand, within AO356_29530 at 6868.286 kb on - strand, within AO356_29530 at 6868.367 kb on - strand, within AO356_29530 at 6868.504 kb on + strand, within AO356_29530 at 6868.504 kb on + strand, within AO356_29530 at 6868.573 kb on - strand, within AO356_29530 at 6868.580 kb on - strand, within AO356_29530 at 6868.580 kb on - strand, within AO356_29530 at 6868.730 kb on - strand, within AO356_29530 at 6868.798 kb on + strand, within AO356_29530 at 6868.799 kb on - strand, within AO356_29530 at 6868.819 kb on + strand, within AO356_29530 at 6868.820 kb on - strand, within AO356_29530 at 6868.820 kb on - strand, within AO356_29530 at 6868.877 kb on + strand, within AO356_29530 at 6868.878 kb on - strand, within AO356_29530
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3 remove 6,865,982 + AO356_29520 0.65 -0.4 6,865,983 - AO356_29520 0.65 -1.1 6,866,021 + AO356_29520 0.66 -0.6 6,866,022 - AO356_29520 0.66 -0.8 6,866,022 - AO356_29520 0.66 -0.1 6,866,063 + AO356_29520 0.68 +1.2 6,866,063 + AO356_29520 0.68 -1.1 6,866,064 - AO356_29520 0.68 +0.9 6,866,120 + AO356_29520 0.71 +0.8 6,866,120 + AO356_29520 0.71 +0.5 6,866,121 - AO356_29520 0.71 -1.5 6,866,223 - AO356_29520 0.75 +0.5 6,866,223 - AO356_29520 0.75 -1.1 6,866,289 + AO356_29520 0.78 +0.9 6,866,290 - AO356_29520 0.78 +0.5 6,866,290 - AO356_29520 0.78 +2.5 6,866,406 - AO356_29520 0.83 -1.1 6,866,406 - AO356_29520 0.83 -0.1 6,866,420 + AO356_29520 0.84 +0.5 6,866,420 + AO356_29520 0.84 +0.5 6,866,420 + AO356_29520 0.84 +1.2 6,866,420 + AO356_29520 0.84 +0.2 6,866,420 + AO356_29520 0.84 +1.5 6,866,420 + AO356_29520 0.84 +1.2 6,866,421 - AO356_29520 0.84 -0.5 6,866,421 - AO356_29520 0.84 -1.1 6,866,421 - AO356_29520 0.84 -0.5 6,866,421 - AO356_29520 0.84 +0.5 6,866,421 - AO356_29520 0.84 +1.2 6,866,507 + AO356_29520 0.87 +0.5 6,866,507 + AO356_29520 0.87 +0.8 6,866,508 - AO356_29520 0.87 -1.1 6,866,508 - AO356_29520 0.87 -1.1 6,866,629 - -1.1 6,866,782 + -0.1 6,866,783 - +0.2 6,866,783 - -1.7 6,866,805 + +1.2 6,866,806 - -0.1 6,866,829 - -1.1 6,866,829 - +0.9 6,866,829 - -0.8 6,866,902 + +0.1 6,866,902 + +0.5 6,866,902 + +0.4 6,866,903 - -0.1 6,866,903 - -0.3 6,866,904 + +1.3 6,866,905 - -0.7 6,867,283 + AO356_29525 0.34 -0.3 6,867,444 + AO356_29525 0.51 -1.4 6,867,610 - AO356_29525 0.69 -0.1 6,867,639 + AO356_29525 0.72 -0.3 6,867,951 - -2.1 6,868,095 + -0.5 6,868,095 + +0.5 6,868,096 - -0.1 6,868,129 + +2.4 6,868,130 - -0.6 6,868,130 - -1.7 6,868,130 - +1.1 6,868,130 - -1.1 6,868,130 - -1.1 6,868,160 - +0.4 6,868,172 - +0.9 6,868,191 + +0.9 6,868,192 - -1.1 6,868,243 + -0.1 6,868,243 + -2.1 6,868,245 + +0.5 6,868,285 + AO356_29530 0.12 +0.4 6,868,286 - AO356_29530 0.12 -1.1 6,868,367 - AO356_29530 0.17 +0.5 6,868,504 + AO356_29530 0.25 +0.5 6,868,504 + AO356_29530 0.25 +2.8 6,868,573 - AO356_29530 0.30 +0.2 6,868,580 - AO356_29530 0.30 -0.4 6,868,580 - AO356_29530 0.30 -1.1 6,868,730 - AO356_29530 0.39 +0.7 6,868,798 + AO356_29530 0.44 +0.5 6,868,799 - AO356_29530 0.44 -0.6 6,868,819 + AO356_29530 0.45 +0.5 6,868,820 - AO356_29530 0.45 -0.1 6,868,820 - AO356_29530 0.45 -1.4 6,868,877 + AO356_29530 0.49 -1.1 6,868,878 - AO356_29530 0.49 +0.4
Or see this region's nucleotide sequence