Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29340

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29330 and AO356_29335 are separated by 46 nucleotidesAO356_29335 and AO356_29340 are separated by 34 nucleotidesAO356_29340 and AO356_29345 are separated by 68 nucleotides AO356_29330: AO356_29330 - ABC transporter substrate-binding protein, at 6,822,318 to 6,823,295 _29330 AO356_29335: AO356_29335 - sugar dehydrogenase, at 6,823,342 to 6,824,103 _29335 AO356_29340: AO356_29340 - multidrug DMT transporter permease, at 6,824,138 to 6,824,965 _29340 AO356_29345: AO356_29345 - LysR family transcriptional regulator, at 6,825,034 to 6,825,939 _29345 Position (kb) 6824 6825Strain fitness (log2 ratio) -2 -1 0 1 2at 6823.171 kb on - strand, within AO356_29330at 6823.186 kb on + strand, within AO356_29330at 6823.343 kb on + strandat 6823.343 kb on + strandat 6823.344 kb on - strandat 6823.517 kb on + strand, within AO356_29335at 6823.517 kb on + strand, within AO356_29335at 6823.517 kb on + strand, within AO356_29335at 6823.518 kb on - strand, within AO356_29335at 6823.518 kb on - strand, within AO356_29335at 6823.518 kb on - strand, within AO356_29335at 6823.518 kb on - strand, within AO356_29335at 6823.518 kb on - strand, within AO356_29335at 6823.518 kb on - strand, within AO356_29335at 6823.521 kb on + strand, within AO356_29335at 6823.521 kb on + strand, within AO356_29335at 6823.521 kb on + strand, within AO356_29335at 6823.521 kb on + strand, within AO356_29335at 6823.521 kb on + strand, within AO356_29335at 6823.521 kb on + strand, within AO356_29335at 6823.521 kb on + strand, within AO356_29335at 6823.521 kb on + strand, within AO356_29335at 6823.521 kb on + strand, within AO356_29335at 6823.521 kb on + strand, within AO356_29335at 6823.522 kb on - strand, within AO356_29335at 6823.522 kb on - strand, within AO356_29335at 6823.522 kb on - strand, within AO356_29335at 6823.522 kb on - strand, within AO356_29335at 6823.522 kb on - strand, within AO356_29335at 6823.629 kb on - strand, within AO356_29335at 6823.629 kb on - strand, within AO356_29335at 6823.791 kb on + strand, within AO356_29335at 6823.991 kb on + strand, within AO356_29335at 6823.992 kb on - strand, within AO356_29335at 6823.992 kb on - strand, within AO356_29335at 6823.992 kb on - strand, within AO356_29335at 6823.992 kb on - strand, within AO356_29335at 6823.992 kb on - strand, within AO356_29335at 6824.299 kb on - strand, within AO356_29340at 6824.299 kb on - strand, within AO356_29340at 6824.299 kb on - strand, within AO356_29340at 6824.313 kb on + strand, within AO356_29340at 6824.313 kb on + strand, within AO356_29340at 6824.357 kb on - strand, within AO356_29340at 6824.403 kb on + strand, within AO356_29340at 6824.403 kb on + strand, within AO356_29340at 6824.404 kb on - strand, within AO356_29340at 6824.452 kb on - strand, within AO356_29340at 6824.484 kb on - strand, within AO356_29340at 6824.484 kb on - strand, within AO356_29340at 6824.484 kb on - strand, within AO356_29340at 6824.484 kb on - strand, within AO356_29340at 6824.536 kb on - strand, within AO356_29340at 6824.570 kb on - strand, within AO356_29340at 6824.727 kb on + strand, within AO356_29340at 6824.728 kb on - strand, within AO356_29340at 6824.958 kb on - strandat 6824.976 kb on - strandat 6824.976 kb on - strandat 6825.097 kb on - strandat 6825.127 kb on + strand, within AO356_29345at 6825.127 kb on + strand, within AO356_29345at 6825.127 kb on + strand, within AO356_29345at 6825.128 kb on - strand, within AO356_29345at 6825.128 kb on - strand, within AO356_29345at 6825.134 kb on + strand, within AO356_29345at 6825.134 kb on + strand, within AO356_29345at 6825.134 kb on + strand, within AO356_29345at 6825.135 kb on - strand, within AO356_29345at 6825.137 kb on + strand, within AO356_29345at 6825.138 kb on - strand, within AO356_29345at 6825.138 kb on - strand, within AO356_29345at 6825.138 kb on - strand, within AO356_29345at 6825.138 kb on - strand, within AO356_29345at 6825.138 kb on - strand, within AO356_29345at 6825.264 kb on + strand, within AO356_29345at 6825.264 kb on + strand, within AO356_29345at 6825.265 kb on - strand, within AO356_29345at 6825.265 kb on - strand, within AO356_29345at 6825.271 kb on - strand, within AO356_29345at 6825.271 kb on - strand, within AO356_29345at 6825.370 kb on - strand, within AO356_29345at 6825.412 kb on - strand, within AO356_29345at 6825.641 kb on + strand, within AO356_29345at 6825.952 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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6,823,171 - AO356_29330 0.87 -1.1
6,823,186 + AO356_29330 0.89 +0.4
6,823,343 + -0.7
6,823,343 + +0.6
6,823,344 - +0.2
6,823,517 + AO356_29335 0.23 +0.8
6,823,517 + AO356_29335 0.23 +0.9
6,823,517 + AO356_29335 0.23 +0.7
6,823,518 - AO356_29335 0.23 -1.7
6,823,518 - AO356_29335 0.23 +0.6
6,823,518 - AO356_29335 0.23 +0.3
6,823,518 - AO356_29335 0.23 +1.2
6,823,518 - AO356_29335 0.23 -1.1
6,823,518 - AO356_29335 0.23 +1.7
6,823,521 + AO356_29335 0.23 -0.7
6,823,521 + AO356_29335 0.23 -0.0
6,823,521 + AO356_29335 0.23 +0.2
6,823,521 + AO356_29335 0.23 -0.5
6,823,521 + AO356_29335 0.23 -0.3
6,823,521 + AO356_29335 0.23 -0.7
6,823,521 + AO356_29335 0.23 +0.7
6,823,521 + AO356_29335 0.23 +1.9
6,823,521 + AO356_29335 0.23 +0.8
6,823,521 + AO356_29335 0.23 +0.9
6,823,522 - AO356_29335 0.24 -2.1
6,823,522 - AO356_29335 0.24 +0.8
6,823,522 - AO356_29335 0.24 +0.2
6,823,522 - AO356_29335 0.24 -0.8
6,823,522 - AO356_29335 0.24 -2.2
6,823,629 - AO356_29335 0.38 +0.5
6,823,629 - AO356_29335 0.38 +0.5
6,823,791 + AO356_29335 0.59 +0.1
6,823,991 + AO356_29335 0.85 +0.2
6,823,992 - AO356_29335 0.85 -1.6
6,823,992 - AO356_29335 0.85 -0.7
6,823,992 - AO356_29335 0.85 -1.1
6,823,992 - AO356_29335 0.85 +2.4
6,823,992 - AO356_29335 0.85 -0.1
6,824,299 - AO356_29340 0.19 +0.7
6,824,299 - AO356_29340 0.19 -0.5
6,824,299 - AO356_29340 0.19 -1.1
6,824,313 + AO356_29340 0.21 -0.3
6,824,313 + AO356_29340 0.21 +0.9
6,824,357 - AO356_29340 0.26 -1.5
6,824,403 + AO356_29340 0.32 +1.9
6,824,403 + AO356_29340 0.32 -1.1
6,824,404 - AO356_29340 0.32 +0.3
6,824,452 - AO356_29340 0.38 +0.1
6,824,484 - AO356_29340 0.42 +1.2
6,824,484 - AO356_29340 0.42 +0.2
6,824,484 - AO356_29340 0.42 -0.5
6,824,484 - AO356_29340 0.42 +0.5
6,824,536 - AO356_29340 0.48 +1.2
6,824,570 - AO356_29340 0.52 -1.5
6,824,727 + AO356_29340 0.71 +0.1
6,824,728 - AO356_29340 0.71 -2.1
6,824,958 - +0.9
6,824,976 - -0.4
6,824,976 - +0.5
6,825,097 - -0.1
6,825,127 + AO356_29345 0.10 +0.5
6,825,127 + AO356_29345 0.10 -0.2
6,825,127 + AO356_29345 0.10 -0.1
6,825,128 - AO356_29345 0.10 -0.5
6,825,128 - AO356_29345 0.10 +0.3
6,825,134 + AO356_29345 0.11 +1.6
6,825,134 + AO356_29345 0.11 +0.1
6,825,134 + AO356_29345 0.11 +1.4
6,825,135 - AO356_29345 0.11 -1.1
6,825,137 + AO356_29345 0.11 +0.9
6,825,138 - AO356_29345 0.11 -0.9
6,825,138 - AO356_29345 0.11 +0.5
6,825,138 - AO356_29345 0.11 -1.9
6,825,138 - AO356_29345 0.11 -0.5
6,825,138 - AO356_29345 0.11 -0.7
6,825,264 + AO356_29345 0.25 +1.9
6,825,264 + AO356_29345 0.25 +1.3
6,825,265 - AO356_29345 0.25 +0.9
6,825,265 - AO356_29345 0.25 -0.3
6,825,271 - AO356_29345 0.26 -0.7
6,825,271 - AO356_29345 0.26 -0.1
6,825,370 - AO356_29345 0.37 -0.4
6,825,412 - AO356_29345 0.42 +1.0
6,825,641 + AO356_29345 0.67 +0.9
6,825,952 + +0.8

Or see this region's nucleotide sequence