Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28555

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28550 and AO356_28555 are separated by 4 nucleotidesAO356_28555 and AO356_28560 are separated by 153 nucleotides AO356_28550: AO356_28550 - bifunctional D-altronate/D-mannonate dehydratase, at 6,635,796 to 6,637,007 _28550 AO356_28555: AO356_28555 - ketodeoxygluconokinase, at 6,637,012 to 6,638,013 _28555 AO356_28560: AO356_28560 - transcriptional regulator, at 6,638,167 to 6,638,949 _28560 Position (kb) 6637 6638 6639Strain fitness (log2 ratio) -1 0 1 2at 6636.163 kb on + strand, within AO356_28550at 6636.163 kb on + strand, within AO356_28550at 6636.439 kb on + strand, within AO356_28550at 6636.439 kb on + strand, within AO356_28550at 6636.448 kb on + strand, within AO356_28550at 6636.502 kb on + strand, within AO356_28550at 6636.532 kb on + strand, within AO356_28550at 6636.532 kb on + strand, within AO356_28550at 6636.580 kb on + strand, within AO356_28550at 6636.649 kb on + strand, within AO356_28550at 6636.692 kb on - strand, within AO356_28550at 6636.785 kb on - strand, within AO356_28550at 6636.803 kb on - strand, within AO356_28550at 6637.304 kb on - strand, within AO356_28555at 6637.320 kb on - strand, within AO356_28555at 6637.418 kb on + strand, within AO356_28555at 6637.463 kb on + strand, within AO356_28555at 6637.463 kb on + strand, within AO356_28555at 6637.464 kb on - strand, within AO356_28555at 6637.574 kb on + strand, within AO356_28555at 6637.580 kb on + strand, within AO356_28555at 6637.581 kb on - strand, within AO356_28555at 6637.706 kb on + strand, within AO356_28555at 6638.132 kb on - strandat 6638.132 kb on - strandat 6638.146 kb on + strandat 6638.345 kb on - strand, within AO356_28560at 6638.345 kb on - strand, within AO356_28560at 6638.522 kb on - strand, within AO356_28560at 6638.545 kb on + strand, within AO356_28560at 6638.546 kb on - strand, within AO356_28560at 6638.546 kb on - strand, within AO356_28560at 6638.561 kb on - strand, within AO356_28560at 6638.591 kb on - strand, within AO356_28560at 6638.591 kb on - strand, within AO356_28560at 6638.689 kb on - strand, within AO356_28560at 6638.711 kb on - strand, within AO356_28560at 6638.711 kb on - strand, within AO356_28560at 6638.747 kb on - strand, within AO356_28560at 6638.884 kb on + strandat 6638.884 kb on + strandat 6638.885 kb on - strandat 6638.948 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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6,636,163 + AO356_28550 0.30 +0.4
6,636,163 + AO356_28550 0.30 -0.2
6,636,439 + AO356_28550 0.53 -1.2
6,636,439 + AO356_28550 0.53 +1.2
6,636,448 + AO356_28550 0.54 -0.9
6,636,502 + AO356_28550 0.58 -1.2
6,636,532 + AO356_28550 0.61 +0.4
6,636,532 + AO356_28550 0.61 +1.8
6,636,580 + AO356_28550 0.65 +0.4
6,636,649 + AO356_28550 0.70 +1.1
6,636,692 - AO356_28550 0.74 -0.5
6,636,785 - AO356_28550 0.82 -0.6
6,636,803 - AO356_28550 0.83 +0.4
6,637,304 - AO356_28555 0.29 -1.6
6,637,320 - AO356_28555 0.31 -1.2
6,637,418 + AO356_28555 0.41 +1.1
6,637,463 + AO356_28555 0.45 -0.2
6,637,463 + AO356_28555 0.45 +0.1
6,637,464 - AO356_28555 0.45 +2.2
6,637,574 + AO356_28555 0.56 +0.4
6,637,580 + AO356_28555 0.57 +1.4
6,637,581 - AO356_28555 0.57 +1.1
6,637,706 + AO356_28555 0.69 -0.0
6,638,132 - +0.8
6,638,132 - -0.2
6,638,146 + -1.2
6,638,345 - AO356_28560 0.23 +1.4
6,638,345 - AO356_28560 0.23 -1.2
6,638,522 - AO356_28560 0.45 +0.1
6,638,545 + AO356_28560 0.48 -1.2
6,638,546 - AO356_28560 0.48 +1.1
6,638,546 - AO356_28560 0.48 +0.4
6,638,561 - AO356_28560 0.50 -1.2
6,638,591 - AO356_28560 0.54 +1.3
6,638,591 - AO356_28560 0.54 +1.5
6,638,689 - AO356_28560 0.67 +1.1
6,638,711 - AO356_28560 0.69 -0.0
6,638,711 - AO356_28560 0.69 -0.8
6,638,747 - AO356_28560 0.74 +0.4
6,638,884 + +1.9
6,638,884 + +0.4
6,638,885 - -0.0
6,638,948 - -0.2

Or see this region's nucleotide sequence