Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28440

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28430 and AO356_28435 are separated by 153 nucleotidesAO356_28435 and AO356_28440 are separated by 15 nucleotidesAO356_28440 and AO356_28445 are separated by 118 nucleotides AO356_28430: AO356_28430 - hypothetical protein, at 6,610,671 to 6,611,048 _28430 AO356_28435: AO356_28435 - SAM-dependent methyltransferase, at 6,611,202 to 6,611,897 _28435 AO356_28440: AO356_28440 - galactose 1-dehydrogenase, at 6,611,913 to 6,612,839 _28440 AO356_28445: AO356_28445 - decarboxylase, at 6,612,958 to 6,613,752 _28445 Position (kb) 6611 6612 6613Strain fitness (log2 ratio) -2 -1 0 1at 6610.965 kb on + strand, within AO356_28430at 6610.989 kb on - strand, within AO356_28430at 6611.018 kb on + strandat 6611.018 kb on + strandat 6611.019 kb on - strandat 6611.380 kb on + strand, within AO356_28435at 6611.380 kb on + strand, within AO356_28435at 6611.398 kb on + strand, within AO356_28435at 6611.441 kb on - strand, within AO356_28435at 6611.849 kb on + strandat 6612.034 kb on + strand, within AO356_28440at 6612.921 kb on + strandat 6612.922 kb on - strandat 6612.922 kb on - strandat 6612.925 kb on + strandat 6613.088 kb on + strand, within AO356_28445at 6613.531 kb on + strand, within AO356_28445at 6613.591 kb on + strand, within AO356_28445

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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6,610,965 + AO356_28430 0.78 -1.3
6,610,989 - AO356_28430 0.84 +1.3
6,611,018 + -1.0
6,611,018 + -2.3
6,611,019 - -0.3
6,611,380 + AO356_28435 0.26 -0.7
6,611,380 + AO356_28435 0.26 -1.3
6,611,398 + AO356_28435 0.28 -0.3
6,611,441 - AO356_28435 0.34 -0.3
6,611,849 + -1.3
6,612,034 + AO356_28440 0.13 -1.3
6,612,921 + +0.3
6,612,922 - +0.1
6,612,922 - -2.3
6,612,925 + -1.3
6,613,088 + AO356_28445 0.16 -0.7
6,613,531 + AO356_28445 0.72 +0.7
6,613,591 + AO356_28445 0.80 -0.9

Or see this region's nucleotide sequence