Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27965

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27955 and AO356_27960 are separated by 90 nucleotidesAO356_27960 and AO356_27965 are separated by 71 nucleotidesAO356_27965 and AO356_27970 are separated by 285 nucleotides AO356_27955: AO356_27955 - hypothetical protein, at 6,380,813 to 6,382,462 _27955 AO356_27960: AO356_27960 - 3-alpha-hydroxysteroid dehydrogenase, at 6,382,553 to 6,383,320 _27960 AO356_27965: AO356_27965 - benzaldehyde dehydrogenase, at 6,383,392 to 6,384,864 _27965 AO356_27970: AO356_27970 - Fis family transcriptional regulator, at 6,385,150 to 6,386,925 _27970 Position (kb) 6383 6384 6385Strain fitness (log2 ratio) -2 -1 0 1 2at 6382.399 kb on + strandat 6382.444 kb on + strandat 6382.560 kb on + strandat 6382.561 kb on - strandat 6382.561 kb on - strandat 6382.662 kb on + strand, within AO356_27960at 6382.815 kb on + strand, within AO356_27960at 6382.815 kb on + strand, within AO356_27960at 6382.816 kb on - strand, within AO356_27960at 6382.852 kb on - strand, within AO356_27960at 6383.046 kb on + strand, within AO356_27960at 6383.046 kb on + strand, within AO356_27960at 6383.046 kb on + strand, within AO356_27960at 6383.047 kb on - strand, within AO356_27960at 6383.448 kb on - strandat 6384.186 kb on + strand, within AO356_27965at 6384.187 kb on - strand, within AO356_27965at 6384.866 kb on + strandat 6384.866 kb on + strandat 6384.866 kb on + strandat 6384.866 kb on + strandat 6384.867 kb on - strandat 6384.867 kb on - strandat 6385.094 kb on + strandat 6385.095 kb on - strandat 6385.095 kb on - strandat 6385.101 kb on + strandat 6385.156 kb on - strandat 6385.156 kb on - strandat 6385.299 kb on + strandat 6385.299 kb on + strandat 6385.577 kb on - strand, within AO356_27970at 6385.676 kb on - strand, within AO356_27970at 6385.816 kb on + strand, within AO356_27970

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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6,382,399 + +0.4
6,382,444 + -0.2
6,382,560 + +0.5
6,382,561 - -0.2
6,382,561 - -2.2
6,382,662 + AO356_27960 0.14 -0.2
6,382,815 + AO356_27960 0.34 -0.2
6,382,815 + AO356_27960 0.34 +0.8
6,382,816 - AO356_27960 0.34 -1.5
6,382,852 - AO356_27960 0.39 -0.2
6,383,046 + AO356_27960 0.64 -0.2
6,383,046 + AO356_27960 0.64 -1.2
6,383,046 + AO356_27960 0.64 -0.4
6,383,047 - AO356_27960 0.64 -0.0
6,383,448 - -0.5
6,384,186 + AO356_27965 0.54 -0.2
6,384,187 - AO356_27965 0.54 -1.2
6,384,866 + +1.4
6,384,866 + +1.8
6,384,866 + +0.4
6,384,866 + -1.2
6,384,867 - -1.2
6,384,867 - -1.2
6,385,094 + +0.4
6,385,095 - -0.8
6,385,095 - -0.6
6,385,101 + +0.4
6,385,156 - -0.2
6,385,156 - +0.4
6,385,299 + +1.1
6,385,299 + +0.1
6,385,577 - AO356_27970 0.24 -0.2
6,385,676 - AO356_27970 0.30 -2.2
6,385,816 + AO356_27970 0.38 -0.2

Or see this region's nucleotide sequence