Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27455 and AO356_27460 are separated by 123 nucleotides AO356_27460 and AO356_27465 are separated by 60 nucleotides
AO356_27455: AO356_27455 - LysR family transcriptional regulator, at 6,255,915 to 6,256,901
_27455
AO356_27460: AO356_27460 - galactonate dehydratase, at 6,257,025 to 6,258,572
_27460
AO356_27465: AO356_27465 - ketoglutarate semialdehyde dehydrogenase, at 6,258,633 to 6,260,213
_27465
Position (kb)
6257
6258
6259 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6256.056 kb on - strand, within AO356_27455 at 6256.056 kb on - strand, within AO356_27455 at 6256.148 kb on - strand, within AO356_27455 at 6256.164 kb on - strand, within AO356_27455 at 6256.234 kb on + strand, within AO356_27455 at 6256.235 kb on - strand, within AO356_27455 at 6256.539 kb on + strand, within AO356_27455 at 6256.540 kb on - strand, within AO356_27455 at 6256.540 kb on - strand, within AO356_27455 at 6256.540 kb on - strand, within AO356_27455 at 6256.764 kb on + strand, within AO356_27455 at 6256.772 kb on + strand, within AO356_27455 at 6256.773 kb on - strand, within AO356_27455 at 6256.817 kb on + strand at 6256.817 kb on + strand at 6256.934 kb on + strand at 6256.957 kb on + strand at 6256.958 kb on - strand at 6256.987 kb on + strand at 6257.172 kb on - strand at 6257.251 kb on + strand, within AO356_27460 at 6257.251 kb on + strand, within AO356_27460 at 6257.252 kb on - strand, within AO356_27460 at 6257.409 kb on + strand, within AO356_27460 at 6257.409 kb on + strand, within AO356_27460 at 6257.409 kb on + strand, within AO356_27460 at 6257.410 kb on - strand, within AO356_27460 at 6257.418 kb on - strand, within AO356_27460 at 6257.418 kb on - strand, within AO356_27460 at 6257.424 kb on - strand, within AO356_27460 at 6257.424 kb on - strand, within AO356_27460 at 6257.424 kb on - strand, within AO356_27460 at 6257.508 kb on + strand, within AO356_27460 at 6257.974 kb on + strand, within AO356_27460 at 6257.976 kb on + strand, within AO356_27460 at 6257.977 kb on - strand, within AO356_27460 at 6257.977 kb on - strand, within AO356_27460 at 6258.064 kb on - strand, within AO356_27460 at 6258.074 kb on + strand, within AO356_27460 at 6258.074 kb on + strand, within AO356_27460 at 6258.075 kb on - strand, within AO356_27460 at 6258.075 kb on - strand, within AO356_27460 at 6258.088 kb on + strand, within AO356_27460 at 6258.196 kb on - strand, within AO356_27460 at 6258.201 kb on + strand, within AO356_27460 at 6258.253 kb on - strand, within AO356_27460 at 6258.330 kb on + strand, within AO356_27460 at 6258.330 kb on + strand, within AO356_27460 at 6258.331 kb on - strand, within AO356_27460 at 6258.602 kb on + strand at 6258.603 kb on - strand at 6258.603 kb on - strand at 6258.731 kb on - strand at 6258.735 kb on + strand at 6258.950 kb on + strand, within AO356_27465 at 6259.002 kb on + strand, within AO356_27465 at 6259.069 kb on - strand, within AO356_27465 at 6259.109 kb on + strand, within AO356_27465 at 6259.180 kb on + strand, within AO356_27465 at 6259.287 kb on + strand, within AO356_27465 at 6259.288 kb on - strand, within AO356_27465 at 6259.288 kb on - strand, within AO356_27465 at 6259.288 kb on - strand, within AO356_27465 at 6259.315 kb on + strand, within AO356_27465 at 6259.315 kb on + strand, within AO356_27465 at 6259.315 kb on + strand, within AO356_27465 at 6259.316 kb on - strand, within AO356_27465 at 6259.316 kb on - strand, within AO356_27465 at 6259.383 kb on - strand, within AO356_27465 at 6259.552 kb on + strand, within AO356_27465
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3 remove 6,256,056 - AO356_27455 0.14 -0.8 6,256,056 - AO356_27455 0.14 +1.1 6,256,148 - AO356_27455 0.24 +1.2 6,256,164 - AO356_27455 0.25 +0.3 6,256,234 + AO356_27455 0.32 -0.9 6,256,235 - AO356_27455 0.32 -0.9 6,256,539 + AO356_27455 0.63 +0.7 6,256,540 - AO356_27455 0.63 -0.7 6,256,540 - AO356_27455 0.63 +1.3 6,256,540 - AO356_27455 0.63 -0.6 6,256,764 + AO356_27455 0.86 -1.9 6,256,772 + AO356_27455 0.87 -0.3 6,256,773 - AO356_27455 0.87 +0.9 6,256,817 + +1.3 6,256,817 + +0.2 6,256,934 + -1.9 6,256,957 + +1.4 6,256,958 - +1.4 6,256,987 + -0.6 6,257,172 - +0.7 6,257,251 + AO356_27460 0.15 +1.4 6,257,251 + AO356_27460 0.15 +0.8 6,257,252 - AO356_27460 0.15 +1.5 6,257,409 + AO356_27460 0.25 -0.6 6,257,409 + AO356_27460 0.25 -0.2 6,257,409 + AO356_27460 0.25 -0.8 6,257,410 - AO356_27460 0.25 +0.6 6,257,418 - AO356_27460 0.25 -2.3 6,257,418 - AO356_27460 0.25 +1.2 6,257,424 - AO356_27460 0.26 +0.3 6,257,424 - AO356_27460 0.26 +0.3 6,257,424 - AO356_27460 0.26 -1.0 6,257,508 + AO356_27460 0.31 -0.1 6,257,974 + AO356_27460 0.61 +0.7 6,257,976 + AO356_27460 0.61 +1.0 6,257,977 - AO356_27460 0.61 -1.1 6,257,977 - AO356_27460 0.61 +0.4 6,258,064 - AO356_27460 0.67 -0.9 6,258,074 + AO356_27460 0.68 +0.8 6,258,074 + AO356_27460 0.68 +1.1 6,258,075 - AO356_27460 0.68 -0.3 6,258,075 - AO356_27460 0.68 +0.1 6,258,088 + AO356_27460 0.69 +0.8 6,258,196 - AO356_27460 0.76 -0.2 6,258,201 + AO356_27460 0.76 +0.0 6,258,253 - AO356_27460 0.79 +0.1 6,258,330 + AO356_27460 0.84 +0.0 6,258,330 + AO356_27460 0.84 -0.8 6,258,331 - AO356_27460 0.84 +0.7 6,258,602 + +0.8 6,258,603 - +1.7 6,258,603 - +0.5 6,258,731 - +1.3 6,258,735 + +0.3 6,258,950 + AO356_27465 0.20 +1.2 6,259,002 + AO356_27465 0.23 +0.2 6,259,069 - AO356_27465 0.28 +2.5 6,259,109 + AO356_27465 0.30 +0.3 6,259,180 + AO356_27465 0.35 +0.9 6,259,287 + AO356_27465 0.41 +0.2 6,259,288 - AO356_27465 0.41 -0.8 6,259,288 - AO356_27465 0.41 -0.5 6,259,288 - AO356_27465 0.41 -0.4 6,259,315 + AO356_27465 0.43 +0.4 6,259,315 + AO356_27465 0.43 -0.3 6,259,315 + AO356_27465 0.43 -1.1 6,259,316 - AO356_27465 0.43 +1.1 6,259,316 - AO356_27465 0.43 +1.3 6,259,383 - AO356_27465 0.47 +1.0 6,259,552 + AO356_27465 0.58 +0.0
Or see this region's nucleotide sequence