Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26975

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_26970 and AO356_26975 are separated by 12 nucleotidesAO356_26975 and AO356_26980 are separated by 153 nucleotidesAO356_26980 and AO356_26985 are separated by 121 nucleotides AO356_26970: AO356_26970 - sodium:proton antiporter, at 6,141,704 to 6,143,041 _26970 AO356_26975: AO356_26975 - hypothetical protein, at 6,143,054 to 6,143,590 _26975 AO356_26980: AO356_26980 - amino acid transporter, at 6,143,744 to 6,143,974 _26980 AO356_26985: AO356_26985 - histidine kinase, at 6,144,096 to 6,146,024 _26985 Position (kb) 6143 6144Strain fitness (log2 ratio) -2 -1 0 1at 6142.397 kb on + strand, within AO356_26970at 6142.398 kb on - strand, within AO356_26970at 6142.428 kb on - strand, within AO356_26970at 6142.886 kb on + strand, within AO356_26970at 6142.887 kb on - strand, within AO356_26970at 6142.887 kb on - strand, within AO356_26970at 6143.015 kb on + strandat 6143.015 kb on + strandat 6143.015 kb on + strandat 6143.015 kb on + strandat 6143.016 kb on - strandat 6143.016 kb on - strandat 6143.016 kb on - strandat 6143.016 kb on - strandat 6143.016 kb on - strandat 6143.082 kb on + strandat 6143.082 kb on + strandat 6143.083 kb on - strandat 6143.083 kb on - strandat 6143.083 kb on - strandat 6143.442 kb on + strand, within AO356_26975at 6143.443 kb on - strand, within AO356_26975at 6143.479 kb on - strand, within AO356_26975at 6143.496 kb on + strand, within AO356_26975at 6143.496 kb on + strand, within AO356_26975at 6143.497 kb on - strand, within AO356_26975at 6143.717 kb on - strandat 6143.717 kb on - strandat 6143.717 kb on - strandat 6143.717 kb on - strandat 6143.722 kb on + strandat 6143.854 kb on + strand, within AO356_26980at 6143.866 kb on + strand, within AO356_26980at 6143.866 kb on + strand, within AO356_26980at 6143.867 kb on - strand, within AO356_26980at 6143.894 kb on - strand, within AO356_26980at 6143.903 kb on + strand, within AO356_26980at 6143.904 kb on - strand, within AO356_26980at 6143.904 kb on - strand, within AO356_26980at 6143.904 kb on - strand, within AO356_26980at 6143.904 kb on - strand, within AO356_26980at 6143.972 kb on + strandat 6144.042 kb on + strandat 6144.097 kb on + strandat 6144.097 kb on + strandat 6144.097 kb on + strandat 6144.098 kb on - strandat 6144.197 kb on - strandat 6144.322 kb on + strand, within AO356_26985at 6144.323 kb on - strand, within AO356_26985at 6144.405 kb on + strand, within AO356_26985at 6144.552 kb on + strand, within AO356_26985

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
remove
6,142,397 + AO356_26970 0.52 -0.3
6,142,398 - AO356_26970 0.52 -0.4
6,142,428 - AO356_26970 0.54 -1.3
6,142,886 + AO356_26970 0.88 -0.6
6,142,887 - AO356_26970 0.88 +1.0
6,142,887 - AO356_26970 0.88 -1.3
6,143,015 + +0.7
6,143,015 + -0.3
6,143,015 + +0.3
6,143,015 + -1.3
6,143,016 - -1.3
6,143,016 - +0.6
6,143,016 - -1.3
6,143,016 - +0.3
6,143,016 - -0.6
6,143,082 + -0.6
6,143,082 + +0.3
6,143,083 - +0.3
6,143,083 - -1.1
6,143,083 - -0.3
6,143,442 + AO356_26975 0.72 +0.3
6,143,443 - AO356_26975 0.72 +1.7
6,143,479 - AO356_26975 0.79 -0.6
6,143,496 + AO356_26975 0.82 +0.7
6,143,496 + AO356_26975 0.82 +0.5
6,143,497 - AO356_26975 0.82 -0.6
6,143,717 - -2.3
6,143,717 - -0.9
6,143,717 - -0.3
6,143,717 - +0.9
6,143,722 + +0.1
6,143,854 + AO356_26980 0.48 -0.1
6,143,866 + AO356_26980 0.53 -0.3
6,143,866 + AO356_26980 0.53 +0.3
6,143,867 - AO356_26980 0.53 +0.9
6,143,894 - AO356_26980 0.65 -0.3
6,143,903 + AO356_26980 0.69 +0.0
6,143,904 - AO356_26980 0.69 +0.4
6,143,904 - AO356_26980 0.69 -1.6
6,143,904 - AO356_26980 0.69 -0.5
6,143,904 - AO356_26980 0.69 +1.0
6,143,972 + -1.9
6,144,042 + +1.0
6,144,097 + -0.7
6,144,097 + -0.7
6,144,097 + -0.3
6,144,098 - +0.5
6,144,197 - +0.7
6,144,322 + AO356_26985 0.12 +1.3
6,144,323 - AO356_26985 0.12 +1.0
6,144,405 + AO356_26985 0.16 +0.0
6,144,552 + AO356_26985 0.24 -2.3

Or see this region's nucleotide sequence