Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26835

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26830 and AO356_26835 are separated by 503 nucleotidesAO356_26835 and AO356_26840 are separated by 16 nucleotidesAO356_26840 and AO356_26845 are separated by 15 nucleotides AO356_26830: AO356_26830 - transcriptional regulator, at 6,109,170 to 6,109,874 _26830 AO356_26835: AO356_26835 - type VI secretion protein ImpA, at 6,110,378 to 6,112,603 _26835 AO356_26840: AO356_26840 - hypothetical protein, at 6,112,620 to 6,113,075 _26840 AO356_26845: AO356_26845 - hypothetical protein, at 6,113,091 to 6,114,206 _26845 Position (kb) 6110 6111 6112 6113Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 6109.585 kb on + strand, within AO356_26830at 6109.585 kb on + strand, within AO356_26830at 6109.697 kb on - strand, within AO356_26830at 6109.697 kb on - strand, within AO356_26830at 6109.741 kb on + strand, within AO356_26830at 6109.742 kb on - strand, within AO356_26830at 6109.759 kb on + strand, within AO356_26830at 6109.802 kb on - strand, within AO356_26830at 6109.802 kb on - strand, within AO356_26830at 6109.802 kb on - strand, within AO356_26830at 6109.831 kb on + strandat 6109.831 kb on + strandat 6109.831 kb on + strandat 6109.832 kb on - strandat 6109.915 kb on + strandat 6110.056 kb on + strandat 6110.086 kb on + strandat 6110.086 kb on + strandat 6110.087 kb on - strandat 6110.134 kb on + strandat 6110.135 kb on - strandat 6110.153 kb on + strandat 6110.212 kb on + strandat 6110.541 kb on + strandat 6110.541 kb on + strandat 6110.542 kb on - strandat 6110.799 kb on - strand, within AO356_26835at 6110.825 kb on + strand, within AO356_26835at 6110.879 kb on + strand, within AO356_26835at 6110.879 kb on + strand, within AO356_26835at 6110.879 kb on + strand, within AO356_26835at 6110.879 kb on + strand, within AO356_26835at 6110.880 kb on - strand, within AO356_26835at 6110.880 kb on - strand, within AO356_26835at 6110.880 kb on - strand, within AO356_26835at 6110.880 kb on - strand, within AO356_26835at 6110.880 kb on - strand, within AO356_26835at 6110.880 kb on - strand, within AO356_26835at 6110.882 kb on + strand, within AO356_26835at 6110.883 kb on - strand, within AO356_26835at 6110.933 kb on + strand, within AO356_26835at 6110.933 kb on + strand, within AO356_26835at 6110.933 kb on + strand, within AO356_26835at 6110.933 kb on + strand, within AO356_26835at 6110.934 kb on - strand, within AO356_26835at 6110.934 kb on - strand, within AO356_26835at 6110.960 kb on + strand, within AO356_26835at 6110.979 kb on - strand, within AO356_26835at 6111.071 kb on + strand, within AO356_26835at 6111.170 kb on + strand, within AO356_26835at 6111.170 kb on + strand, within AO356_26835at 6111.171 kb on - strand, within AO356_26835at 6111.197 kb on + strand, within AO356_26835at 6111.198 kb on - strand, within AO356_26835at 6111.303 kb on - strand, within AO356_26835at 6111.329 kb on + strand, within AO356_26835at 6111.734 kb on + strand, within AO356_26835at 6111.758 kb on + strand, within AO356_26835at 6112.601 kb on + strandat 6112.635 kb on + strandat 6112.635 kb on + strandat 6112.635 kb on + strandat 6112.636 kb on - strandat 6113.013 kb on + strand, within AO356_26840at 6113.073 kb on + strandat 6113.081 kb on + strandat 6113.082 kb on - strandat 6113.338 kb on + strand, within AO356_26845at 6113.353 kb on - strand, within AO356_26845at 6113.512 kb on - strand, within AO356_26845

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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6,109,585 + AO356_26830 0.59 +0.3
6,109,585 + AO356_26830 0.59 -0.7
6,109,697 - AO356_26830 0.75 -1.3
6,109,697 - AO356_26830 0.75 -1.3
6,109,741 + AO356_26830 0.81 -0.3
6,109,742 - AO356_26830 0.81 -0.3
6,109,759 + AO356_26830 0.84 -0.3
6,109,802 - AO356_26830 0.90 +0.3
6,109,802 - AO356_26830 0.90 -0.3
6,109,802 - AO356_26830 0.90 -2.3
6,109,831 + +2.5
6,109,831 + +0.4
6,109,831 + +0.3
6,109,832 - -1.3
6,109,915 + +0.3
6,110,056 + +0.3
6,110,086 + -0.3
6,110,086 + -0.3
6,110,087 - -1.3
6,110,134 + +0.9
6,110,135 - +0.3
6,110,153 + -1.9
6,110,212 + -0.5
6,110,541 + +1.0
6,110,541 + +0.0
6,110,542 - +0.0
6,110,799 - AO356_26835 0.19 -0.3
6,110,825 + AO356_26835 0.20 +0.0
6,110,879 + AO356_26835 0.23 -0.3
6,110,879 + AO356_26835 0.23 -0.1
6,110,879 + AO356_26835 0.23 -0.9
6,110,879 + AO356_26835 0.23 -0.7
6,110,880 - AO356_26835 0.23 +0.3
6,110,880 - AO356_26835 0.23 +0.7
6,110,880 - AO356_26835 0.23 -0.7
6,110,880 - AO356_26835 0.23 -4.1
6,110,880 - AO356_26835 0.23 -1.3
6,110,880 - AO356_26835 0.23 -3.3
6,110,882 + AO356_26835 0.23 -0.3
6,110,883 - AO356_26835 0.23 -2.3
6,110,933 + AO356_26835 0.25 -1.0
6,110,933 + AO356_26835 0.25 -0.6
6,110,933 + AO356_26835 0.25 +0.7
6,110,933 + AO356_26835 0.25 -1.3
6,110,934 - AO356_26835 0.25 -2.3
6,110,934 - AO356_26835 0.25 +1.9
6,110,960 + AO356_26835 0.26 +0.0
6,110,979 - AO356_26835 0.27 +0.3
6,111,071 + AO356_26835 0.31 +1.0
6,111,170 + AO356_26835 0.36 -1.9
6,111,170 + AO356_26835 0.36 +0.5
6,111,171 - AO356_26835 0.36 -1.3
6,111,197 + AO356_26835 0.37 +0.4
6,111,198 - AO356_26835 0.37 +0.7
6,111,303 - AO356_26835 0.42 +0.5
6,111,329 + AO356_26835 0.43 -1.3
6,111,734 + AO356_26835 0.61 -2.3
6,111,758 + AO356_26835 0.62 -0.8
6,112,601 + -1.3
6,112,635 + +0.3
6,112,635 + +0.3
6,112,635 + +0.0
6,112,636 - -0.2
6,113,013 + AO356_26840 0.86 -1.3
6,113,073 + -0.3
6,113,081 + +0.1
6,113,082 - +0.3
6,113,338 + AO356_26845 0.22 -1.3
6,113,353 - AO356_26845 0.23 -0.3
6,113,512 - AO356_26845 0.38 +0.3

Or see this region's nucleotide sequence