Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26830

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26825 and AO356_26830 overlap by 1 nucleotidesAO356_26830 and AO356_26835 are separated by 503 nucleotides AO356_26825: AO356_26825 - histidine kinase, at 6,107,797 to 6,109,170 _26825 AO356_26830: AO356_26830 - transcriptional regulator, at 6,109,170 to 6,109,874 _26830 AO356_26835: AO356_26835 - type VI secretion protein ImpA, at 6,110,378 to 6,112,603 _26835 Position (kb) 6109 6110Strain fitness (log2 ratio) -2 -1 0 1 2at 6108.692 kb on - strand, within AO356_26825at 6108.692 kb on - strand, within AO356_26825at 6108.747 kb on + strand, within AO356_26825at 6108.835 kb on - strand, within AO356_26825at 6108.890 kb on + strand, within AO356_26825at 6108.894 kb on + strand, within AO356_26825at 6108.895 kb on - strand, within AO356_26825at 6108.998 kb on + strand, within AO356_26825at 6108.999 kb on - strand, within AO356_26825at 6109.179 kb on - strandat 6109.193 kb on + strandat 6109.193 kb on + strandat 6109.194 kb on - strandat 6109.215 kb on + strandat 6109.215 kb on + strandat 6109.215 kb on + strandat 6109.216 kb on - strandat 6109.216 kb on - strandat 6109.220 kb on - strandat 6109.220 kb on - strandat 6109.585 kb on + strand, within AO356_26830at 6109.585 kb on + strand, within AO356_26830at 6109.697 kb on - strand, within AO356_26830at 6109.697 kb on - strand, within AO356_26830at 6109.741 kb on + strand, within AO356_26830at 6109.742 kb on - strand, within AO356_26830at 6109.759 kb on + strand, within AO356_26830at 6109.802 kb on - strand, within AO356_26830at 6109.802 kb on - strand, within AO356_26830at 6109.802 kb on - strand, within AO356_26830at 6109.831 kb on + strandat 6109.831 kb on + strandat 6109.831 kb on + strandat 6109.832 kb on - strandat 6109.915 kb on + strandat 6110.056 kb on + strandat 6110.086 kb on + strandat 6110.086 kb on + strandat 6110.087 kb on - strandat 6110.134 kb on + strandat 6110.135 kb on - strandat 6110.153 kb on + strandat 6110.212 kb on + strandat 6110.541 kb on + strandat 6110.541 kb on + strandat 6110.542 kb on - strandat 6110.799 kb on - strand, within AO356_26835at 6110.825 kb on + strand, within AO356_26835

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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6,108,692 - AO356_26825 0.65 -1.3
6,108,692 - AO356_26825 0.65 +1.0
6,108,747 + AO356_26825 0.69 +0.5
6,108,835 - AO356_26825 0.76 -1.9
6,108,890 + AO356_26825 0.80 +0.3
6,108,894 + AO356_26825 0.80 -1.7
6,108,895 - AO356_26825 0.80 +0.2
6,108,998 + AO356_26825 0.87 -0.9
6,108,999 - AO356_26825 0.87 -0.3
6,109,179 - -1.3
6,109,193 + -0.9
6,109,193 + +0.3
6,109,194 - +0.3
6,109,215 + -1.0
6,109,215 + +1.3
6,109,215 + +0.3
6,109,216 - -2.3
6,109,216 - -1.9
6,109,220 - -1.3
6,109,220 - -1.3
6,109,585 + AO356_26830 0.59 +0.3
6,109,585 + AO356_26830 0.59 -0.7
6,109,697 - AO356_26830 0.75 -1.3
6,109,697 - AO356_26830 0.75 -1.3
6,109,741 + AO356_26830 0.81 -0.3
6,109,742 - AO356_26830 0.81 -0.3
6,109,759 + AO356_26830 0.84 -0.3
6,109,802 - AO356_26830 0.90 +0.3
6,109,802 - AO356_26830 0.90 -0.3
6,109,802 - AO356_26830 0.90 -2.3
6,109,831 + +2.5
6,109,831 + +0.4
6,109,831 + +0.3
6,109,832 - -1.3
6,109,915 + +0.3
6,110,056 + +0.3
6,110,086 + -0.3
6,110,086 + -0.3
6,110,087 - -1.3
6,110,134 + +0.9
6,110,135 - +0.3
6,110,153 + -1.9
6,110,212 + -0.5
6,110,541 + +1.0
6,110,541 + +0.0
6,110,542 - +0.0
6,110,799 - AO356_26835 0.19 -0.3
6,110,825 + AO356_26835 0.20 +0.0

Or see this region's nucleotide sequence