Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26155 and AO356_26160 are separated by 16 nucleotides AO356_26160 and AO356_26165 are separated by 126 nucleotides
AO356_26155: AO356_26155 - rhamnonate dehydratase, at 5,919,450 to 5,920,634
_26155
AO356_26160: AO356_26160 - MFS transporter, at 5,920,651 to 5,921,946
_26160
AO356_26165: AO356_26165 - LysR family transcriptional regulator, at 5,922,073 to 5,923,017
_26165
Position (kb) 5920
5921
5922 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5919.661 kb on + strand, within AO356_26155 at 5919.662 kb on - strand, within AO356_26155 at 5919.662 kb on - strand, within AO356_26155 at 5919.662 kb on - strand, within AO356_26155 at 5919.665 kb on + strand, within AO356_26155 at 5919.666 kb on - strand, within AO356_26155 at 5919.666 kb on - strand, within AO356_26155 at 5919.666 kb on - strand, within AO356_26155 at 5919.666 kb on - strand, within AO356_26155 at 5919.668 kb on - strand, within AO356_26155 at 5919.668 kb on - strand, within AO356_26155 at 5919.668 kb on - strand, within AO356_26155 at 5919.668 kb on - strand, within AO356_26155 at 5919.967 kb on + strand, within AO356_26155 at 5919.968 kb on - strand, within AO356_26155 at 5920.160 kb on - strand, within AO356_26155 at 5920.292 kb on - strand, within AO356_26155 at 5920.294 kb on + strand, within AO356_26155 at 5920.294 kb on + strand, within AO356_26155 at 5920.294 kb on + strand, within AO356_26155 at 5920.294 kb on + strand, within AO356_26155 at 5920.295 kb on - strand, within AO356_26155 at 5920.295 kb on - strand, within AO356_26155 at 5920.295 kb on - strand, within AO356_26155 at 5920.310 kb on - strand, within AO356_26155 at 5920.310 kb on - strand, within AO356_26155 at 5920.368 kb on + strand, within AO356_26155 at 5920.369 kb on - strand, within AO356_26155 at 5920.387 kb on + strand, within AO356_26155 at 5920.387 kb on + strand, within AO356_26155 at 5920.388 kb on - strand, within AO356_26155 at 5920.388 kb on - strand, within AO356_26155 at 5920.452 kb on + strand, within AO356_26155 at 5920.452 kb on + strand, within AO356_26155 at 5920.470 kb on + strand, within AO356_26155 at 5920.573 kb on + strand at 5920.874 kb on + strand, within AO356_26160 at 5920.875 kb on - strand, within AO356_26160 at 5920.875 kb on - strand, within AO356_26160 at 5920.898 kb on - strand, within AO356_26160 at 5921.017 kb on - strand, within AO356_26160 at 5921.017 kb on - strand, within AO356_26160 at 5921.166 kb on - strand, within AO356_26160 at 5921.166 kb on - strand, within AO356_26160 at 5921.173 kb on + strand, within AO356_26160 at 5921.173 kb on + strand, within AO356_26160 at 5921.174 kb on - strand, within AO356_26160 at 5921.204 kb on + strand, within AO356_26160 at 5921.204 kb on + strand, within AO356_26160 at 5921.219 kb on + strand, within AO356_26160 at 5921.364 kb on - strand, within AO356_26160 at 5921.514 kb on - strand, within AO356_26160 at 5921.558 kb on + strand, within AO356_26160 at 5921.558 kb on + strand, within AO356_26160 at 5921.559 kb on - strand, within AO356_26160 at 5921.627 kb on + strand, within AO356_26160 at 5921.876 kb on + strand at 5921.877 kb on - strand at 5921.877 kb on - strand at 5921.877 kb on - strand at 5921.877 kb on - strand at 5921.967 kb on + strand at 5921.967 kb on + strand at 5921.967 kb on + strand at 5921.968 kb on - strand at 5921.991 kb on + strand at 5921.992 kb on - strand at 5922.580 kb on + strand, within AO356_26165 at 5922.580 kb on + strand, within AO356_26165 at 5922.581 kb on - strand, within AO356_26165 at 5922.786 kb on + strand, within AO356_26165 at 5922.787 kb on - strand, within AO356_26165 at 5922.787 kb on - strand, within AO356_26165
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3 remove 5,919,661 + AO356_26155 0.18 +0.7 5,919,662 - AO356_26155 0.18 +0.3 5,919,662 - AO356_26155 0.18 -0.1 5,919,662 - AO356_26155 0.18 -0.3 5,919,665 + AO356_26155 0.18 -1.0 5,919,666 - AO356_26155 0.18 +1.3 5,919,666 - AO356_26155 0.18 -1.3 5,919,666 - AO356_26155 0.18 -2.3 5,919,666 - AO356_26155 0.18 +0.3 5,919,668 - AO356_26155 0.18 -0.7 5,919,668 - AO356_26155 0.18 -0.3 5,919,668 - AO356_26155 0.18 +0.1 5,919,668 - AO356_26155 0.18 -1.3 5,919,967 + AO356_26155 0.44 +1.2 5,919,968 - AO356_26155 0.44 -1.0 5,920,160 - AO356_26155 0.60 -0.5 5,920,292 - AO356_26155 0.71 +0.8 5,920,294 + AO356_26155 0.71 -1.3 5,920,294 + AO356_26155 0.71 +0.7 5,920,294 + AO356_26155 0.71 -0.9 5,920,294 + AO356_26155 0.71 +0.1 5,920,295 - AO356_26155 0.71 +1.0 5,920,295 - AO356_26155 0.71 +1.9 5,920,295 - AO356_26155 0.71 +0.5 5,920,310 - AO356_26155 0.73 -0.3 5,920,310 - AO356_26155 0.73 -2.3 5,920,368 + AO356_26155 0.77 +0.0 5,920,369 - AO356_26155 0.78 -1.6 5,920,387 + AO356_26155 0.79 -1.3 5,920,387 + AO356_26155 0.79 +0.3 5,920,388 - AO356_26155 0.79 -0.5 5,920,388 - AO356_26155 0.79 -0.3 5,920,452 + AO356_26155 0.85 -0.7 5,920,452 + AO356_26155 0.85 -1.6 5,920,470 + AO356_26155 0.86 +0.0 5,920,573 + -0.9 5,920,874 + AO356_26160 0.17 -1.9 5,920,875 - AO356_26160 0.17 -1.7 5,920,875 - AO356_26160 0.17 -1.2 5,920,898 - AO356_26160 0.19 -1.3 5,921,017 - AO356_26160 0.28 +1.3 5,921,017 - AO356_26160 0.28 -0.3 5,921,166 - AO356_26160 0.40 -0.3 5,921,166 - AO356_26160 0.40 +0.7 5,921,173 + AO356_26160 0.40 -0.7 5,921,173 + AO356_26160 0.40 -0.9 5,921,174 - AO356_26160 0.40 +0.3 5,921,204 + AO356_26160 0.43 +0.3 5,921,204 + AO356_26160 0.43 +0.7 5,921,219 + AO356_26160 0.44 -0.3 5,921,364 - AO356_26160 0.55 -1.9 5,921,514 - AO356_26160 0.67 +0.3 5,921,558 + AO356_26160 0.70 -0.7 5,921,558 + AO356_26160 0.70 -2.3 5,921,559 - AO356_26160 0.70 -0.9 5,921,627 + AO356_26160 0.75 -1.3 5,921,876 + +0.3 5,921,877 - +0.3 5,921,877 - -0.4 5,921,877 - +0.0 5,921,877 - -0.7 5,921,967 + -1.3 5,921,967 + +0.3 5,921,967 + -0.3 5,921,968 - +0.6 5,921,991 + -1.3 5,921,992 - -1.6 5,922,580 + AO356_26165 0.54 -0.7 5,922,580 + AO356_26165 0.54 +0.3 5,922,581 - AO356_26165 0.54 -1.3 5,922,786 + AO356_26165 0.75 -2.0 5,922,787 - AO356_26165 0.76 +1.0 5,922,787 - AO356_26165 0.76 +1.3
Or see this region's nucleotide sequence